Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3371 ATGGACACTCACGTGAATGGTGATGCCACCTTCTGTTTGAGCGCCAACGGTCAGGTGCCACGTCACGACCCATTGAACTGGGGCGTCGCAGCCCAGGCTTTGGAGGGGAGCCACTTGGACGAGGTCAAGAGGATGGTCGCCGAGTACCGGAAGCCGACAGTTAAGCTTGGCGGCGAGACTTTGACTATATCTCAGGTGGCCGCCATTGCTGCCAAGGACCAAGGTGTCGCCGTCCAGCTCTCCGAGGAGTCCAGACCTGGGGTTAAGGCTAGTAGTGACTGGGTTATGAATAGCATGAACAATGGTACGGACAGCTATGGTGTCACCACCGGCTTTGGTGCCACTTCTCACCGGAGAACCAAACAGGGCGGTGCCTTGCAGAAAGAGCTCATTAGGTTCTTAAATGCTGGAATATTTGGCAATGGAACAGAGACAAATTGCACATTGCCACACACAGCTACTAGAGCAGCAATGCTAGTGAGGATCAACACACTCCTCCAAGGCTACTCAGGAATCAGATTTGAGATCTTGGAAGCCATAACCAAGCTTCTGAACAACAACATTACACCATGTTTGCCACTTAGGGGAACAATCACAGCCTCTGGTGACCTTGTTCCATTATCATACATTGCTGGTTTGTTAACTGGCAGACCAAATTCAAAGGCTGTTGGACCCAATGGAGAGATCCTTAATGCAAAAGAAGCATTCCAAGTGGCCGGAATCGGATCCGAGTTCTTCGAGTTGCAACCTAAAGAAGGCCTTGCACTGGTGAATGGCACTGCTGTTGGTTCCGGACTAGCCTCAATTGTCCTATTTGAGGCCAATATCCTAGCTGTCCTGTCGGAGGTTCTTTCGGCCATATTTGCGGAGGTGATGCAGGGGAAGCCAGAGTTCACTGACCATTTGACACACAAATTGAAGCAGCATCCTGGACAAATTGAGGCTGCAGCCATAATGGAACACATTTTGGATGGTAGCTCATATGTCAAAGCCGCCAAGAAGTTGCACGAGATTGATCCGTTGCAAAAGCCTAAACAGGACAGATATGCACTTAGGACTTCACCTCAATGGCTTGGCCCTTTGATTGAAGTGATTAGATTCTCAACCAAATCAATTGAGAGGGAAATTAACTCTGTTAACGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCTTTGCATGGTGGTAACTTTCAAGGTACTCCAATTGGTGTGTCTATGGATAACACAAGATTGGCCATTGCATCAATTGGGAAACTCATGTTTGCTCAGTTCTCTGAGCTTGTCAATGATTTCTACAACAATGGCTTGCCTTCAAATCTAAGTGCTAGTAGGAACCCCAGCTTGGATTATGGCTTCAAGGGAACTGAAATCGCCATGGCCTCTTACTGTTCCGAACTGCAATATCTTGCAAACCCGGTGACTAGCCATGTCCAGAGTGCTGAGCAGCATAACCAAGATGTGAACTCTCTTGGTTTGATTTCAGCTAGGAAAACAAATGAAGCTGTTGAGATTCTCAAACTTATGTCATCGACCTTCTTGATTGCACTTTGCCAAGCCATTGATTTGAGGCATCTGGAGGAGAATTTGAAGAACACCGTGAAGAACACTGTGAGCCAAGTTGCCAAGAGGACACTAACCACCGGCATCAACGGCGAACTCCACCCATCAAGATTCTGTGAGAAGGATCTTCTCAAGGTTGTTGATAGGGAGTACTGTTTTGCATACATTGATGATCCTTGCAGTGCTACATACCCTTTGATGCAGAAGCTAAGGCAAGTTTTGGTGGAACATGCACTTGCAAATGCTGAAACCGAGAAGAATGTGAACACCTCAATCTTCCAGAAAATTACAACCTTTGAGGAAGAATTGCAGACCCTTTTGCCTAAAGAAGTTGAGGGTGCAAGAATTGCATATGAGAATGGACAAAGTGCGTTACCGAACAAGATCAAGGAATGCAGGTCCTATCCATTGTACAAGTTTGTGAGGGAGGAGTTGGGGACTGAGATGCTAACTGGTGAGAAGGTTAGGTCACCTGGTGAAGAATGTGACAAATTGTTCACGGCAATGTGCCAAGGGAAGATCATTGATCCTCTTCTTGAGTGCATTTCTGAGTGGAATGGTGCTCCTCTTCCTTTATGTTAG 2145 0.4685 MDTHVNGDATFCLSANGQVPRHDPLNWGVAAQALEGSHLDEVKRMVAEYRKPTVKLGGETLTISQVAAIAAKDQGVAVQLSEESRPGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGEILNAKEAFQVAGIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKQHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNEAVEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGINGELHPSRFCEKDLLKVVDREYCFAYIDDPCSATYPLMQKLRQVLVEHALANAETEKNVNTSIFQKITTFEEELQTLLPKEVEGARIAYENGQSALPNKIKECRSYPLYKFVREELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECISEWNGAPLPLC* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3371 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 714 - -
Amo12g3371 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Amo12g3371 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Amo12g3371 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Amo12g3371 714 PANTHER HISTIDINE AMMONIA-LYASE 16 714 IPR001106 -
Amo12g3371 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Amo12g3371 714 Pfam Aromatic amino acid lyase 61 537 IPR001106 -
Amo12g3371 714 CDD PAL-HAL 59 524 IPR001106 -
Amo12g3371 714 Gene3D - 527 648 IPR023144 -
Amo12g3371 714 Gene3D - 14 260 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3371 Amo-Chr12 122922183 122926474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3371 8 714 Monolignol Biosynthesis Gene Families AT2G37040 81.575 0.0 1230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3371 K10775 - gmx:100803857 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3371 12 122922183 122926474 Amo19g3291 19 144573406 144580264 ECH
Amo12g3371 12 122922183 122926474 Amo12g3371 12 122922183 122926474 ECH