Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3364 ATGATAACGTTTATGGAGTCAAAGGAGAAAACAAGAGAAGCAGTGGAGAAGTGTCTGGACCCTCAGCTATGGCATGCGTGTGCAGGTGGCATGGTGCAGATGCCACAGGTGAACACAAAGGTCTATTACTTCCCTCAGGGCCATGCTGAGCATGCATGTGGTCCTGTGAACTTTAGGACCTGCCCCAAAGTGGTTCCACCTATGGTTCCATGCAGGGTTGCTGCTGTGAAGTACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAGCTTAGGCTTCTTCCTCTCAGTGGCAATGATGCTGATTATGGAAATGATGCTGGTGTTGTTGGAGGAGGTGGAATCCATGAACCTGAGGCTCAGGATAAGCCTGCTTCATTTGCAAAGACCTTGACTCAATCTGATGCCAACAATGGTGGGGGGTTTTCGGTTCCTAGGTATTGTGCCGAGACCATTTTCCCGCGGCTGGACTACTCGGCCGACCCTCCGGTACAGAGCATACTTGCAAAAGATGTTCACGGCGAGACGTGGAAGTTTAGGCACATTTATAGGGGCACGCCGAGGCGGCACCTCCTAACTACCGGTTGGAGTACTTTTGTGAATCACAAGAAGCTTGTGGCTGGGGACTCAATTGTGTTTTTGAGGGCGGACAATGGGGAACTGTGTGTTGGGATTCGGAGAGCAAAGAAGGGTCTAGGAGGTGGGCCTGAGGCTTCTTCAGGTTGGAATCCAGCCGGTGGAAATTGTCCAATGCCTTATGGTGGATTTCCAGGGTTTCTGAAGGAGGATGATATGAGGCTCTTGAGAAATGGATTGGACACTGGCACAAGAATGATGGGGAAGGGAAAAGTGCGGCCTGAAGCAGTCATTGAAGCTGCTACTCTTGCTGCCAACAAGCAACCTTTTGAGGTCGTTTACTACCCTCGCGCGAGTACGCCCGAGTTCTGTGTGAAGGCCTCACTGGTTGAAGCTGCACTGCAGATTAGGTGGTGCTCTGGAATAAGGTTCAAGATGGCCTTTGAAACCGAGGACTCGTCGCGAATTAGCTGGTTTATGGGTACCATATCTTCAGTTCAGGTTGCTGATCCCCTTGGATGGCCTAACTCACCTTGGAGGCTTCTTCAGGTTACATGGGACGAACCAGATTTACTTCAAAATGTGAGAAGAGTGAGTCCATGGCTTGTTGAATTGGTATCAAGCATGCCTGCCCTTCATCTTTCACCTTTCTCACCGCCGCGGAAGAAATTAAGATTGCCCCAACACCCGGATTTTCCCCTTGATGGCCAAATTCATGTGCCAACATTTTCCAGCAACCTTCTAGGTCCGAGTAACCCCTATGGTTGTCTACCCGAAACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCAGATCTCCACCTCAGTAAACTGCAGTCAGGTCTATATTCGGCTGGTTTCCCGTCTCTTGATCACGCTGCTACACCAATCAGGGTCCCCAATAACTTACTATTGCAAAAACCCAGCACCAGTGAAAGTGTCTCTTGCTTGTTATCTATGGCGAGTTCTGTGCAATCCTCAAAGAAACCAGATGAAGGGAAGACACCACAGCTTGTGCTTTTTGGCCAAAAGATTCTCACAGAGCAGCAGCTCTCTCTCAGCAGCTCTGGTGATGCTGTCTCCCCTGTTCTTACCGGAAATAGTTCATCCGATGGAAATGCTGATAAACTCAATAATTTTTCTGATGGTTCTGGTTCTGCTCTGCATCAGCAAGGTATACCAGAACGCTCCTCTTGTGAGAGGTTCCCGTGGTATAGGGATCACCGTCAAGAAACCGAGGCCGGTTTGGAGACCGGTCACTGCAAAGTTTTTATGGAATCGGAAGATGTAGGTCGGACATTGGACCTCTCGTTGCTTGCTTCGTACGATGAACTGCACAGAAAGCTAGCAGACATGTTTGGCATCGAAAAATCCGAGATGCTAAGTCATGTGCTCTACCGAGACATAAATGGTGCAGTCAAACACCTTGGAGATGAACCATTCAGTGATTTCTCAAGAACAACAAAGAGATTGACTATTCTAATGGATTCCAGCAGTGACAATGTAGGAGTGTAA 2112 0.4882 MITFMESKEKTREAVEKCLDPQLWHACAGGMVQMPQVNTKVYYFPQGHAEHACGPVNFRTCPKVVPPMVPCRVAAVKYMADPETDEVYAKLRLLPLSGNDADYGNDAGVVGGGGIHEPEAQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQSILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGELCVGIRRAKKGLGGGPEASSGWNPAGGNCPMPYGGFPGFLKEDDMRLLRNGLDTGTRMMGKGKVRPEAVIEAATLAANKQPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLGWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSSMPALHLSPFSPPRKKLRLPQHPDFPLDGQIHVPTFSSNLLGPSNPYGCLPETTPAGMQGARHAHYGISLSDLHLSKLQSGLYSAGFPSLDHAATPIRVPNNLLLQKPSTSESVSCLLSMASSVQSSKKPDEGKTPQLVLFGQKILTEQQLSLSSSGDAVSPVLTGNSSSDGNADKLNNFSDGSGSALHQQGIPERSSCERFPWYRDHRQETEAGLETGHCKVFMESEDVGRTLDLSLLASYDELHRKLADMFGIEKSEMLSHVLYRDINGAVKHLGDEPFSDFSRTTKRLTILMDSSSDNVGV* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3364 703 Gene3D - 125 229 IPR015300 -
Amo12g3364 703 MobiDBLite consensus disorder prediction 556 592 - -
Amo12g3364 703 SUPERFAMILY DNA-binding pseudobarrel domain 121 228 IPR015300 -
Amo12g3364 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 694 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo12g3364 703 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Amo12g3364 703 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Amo12g3364 703 Pfam Auxin response factor 292 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo12g3364 703 Gene3D - 615 701 - -
Amo12g3364 703 Gene3D - 329 403 - -
Amo12g3364 703 CDD B3_DNA 126 227 IPR003340 GO:0003677
Amo12g3364 703 ProSiteProfiles PB1 domain profile. 617 700 IPR000270 GO:0005515
Amo12g3364 703 PANTHER AUXIN RESPONSE FACTOR 7 694 - -
Amo12g3364 703 SMART B3_2 127 229 IPR003340 GO:0003677
Amo12g3364 703 MobiDBLite consensus disorder prediction 556 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3364 Amo-Chr12 122848158 122851774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3364 14 703 B3 DNA Binding Superfamily AT4G30080 57.468 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo12g3364 B3 1.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3364 - - gmx:100796522 1176.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3364 12 122848158 122851774 Amo12g3364 12 122848158 122851774 ECH
Amo12g3364 12 122848158 122851774 Amo18g0497 18 6430497 6434491 ECH
Amo12g3364 12 122848158 122851774 Amo13g0300 13 4138673 4142405 ECH