Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3353 ATGCTCCAAGTTTCAATCTTTCTCCATTTTTTGTTCTTATTCTTCATTTCTGCAACTGCCTTTGGAACCATGGGACCAATCTCTGCATCCTTCGGAAAAGACGAGCTCTTCTGCGCCATCGACGCTAGCGGCAATCAAAACATTCTATGCTTCGGAAACAACGTAACTTCACAAGCTCCATCACAATCCAATTCATCATCATCGTCTTCTTCTTCACTACCTTATTTCACCAGCGTTCCTGCCATGTCAGGGCTTTCCGGGGGCGAAGGTTTTTTCTGCGGCATTTTAGCGAATACCTCACAGGCTTTTTGCTGGGGCGCCGGAAAACCTGCAGGTGATCCCGTTCTGGTGCCGCCAGCGTACCGGAACACCGCGTACTCCCGCATTGCCGCCGGAAAGTCCCACGTCTGCGCCGTCAGAGGATCCTACTTCGCCGATCGAGCTTCCGGCAGCGTGGATTGCTGGGAAGTCGCTCAGACGCGGAACAACACGTTCTACGCCAAGCAGAGCCTTGCGTTCTACGACCAATCCGTTAGCAACCTGGAGCTGAACGACGTGGTTTCCGGCGAGGATTTCGCTTGCGGGAGCGTTAGAGACGGAGGCCTCGTCTGCTGGGGTCCAAATTCGAAGAGTCTCCAAGTTTCCAACGTTTCCGATAGCTTCTCTGTTTTGGCTTCAGGAAGAAACGCGATTTGCGGAGTTTCAAACTCTTCTGGCGAGTTGAAATGCTGGGGCGAGGCGAGTTCATATTGGGATCCTGAATCAGCGGGACGGGTTCAGGTGGTTTCTCTGTCTGCAGGTTCGAAGCATTTCTGTGGGATCAGAAAAGACAGTCATGTTGTGGAGTGTTGGGGTGCCTCAGATTCGTCTGTGGTTCCAAAAGGTTATGGCTTTTTGGCCATTGCTTCTTCGGATTACACAACTTGTGGGATCAGAGAAGATGATCTTTTGCTTGATTGTTGGGTGGTGAACGCATCAAAACCCAATTTTGACTCTCCCTTGGAGCTTTCAAGCCCTGGGCTTTGTCAAAAGGAGTCTTGCGGTGTTGGGGAGTTTGCTTTCAATGTGAGTGTTCTTAATGAGCCTGATTTGAGCAGCTTGTGTGTGAGGCAGGATTTGAGGATATGTTCACCTTGTGGCTCTAATTGCTCTCGGGGTTTGTTCTTGTCTAGTCCTTGTGGTTTGAGCAATGACAGGGTGTGCACTCCTTGTTCTCTTTGCCAGAATAGCTCTTGCTGGGGTGTTTGTGGGATCCACCCAACTTCAGGGTTGCACTTGCACCATTTGCTTCGCTGGGTGCTCATAATTGGATCTTCTGCCTTGGGAGTCCTGCTGATTTTGGTTTGTGGCTTGGTGGCGCGGGGGCGGAGGAGGAAGGGGACAAAGAAGCAATCCAACAAGTCTTGCATGGGGAAGATGGAGCAGGAGGATGATGGCGATTTGAATGGCCTTAACTCGACTCCTTCAATTGCTTCGTGTCCAGGGGTGCCTCAGGTTTTCCGGCTTTCGGAGTTGAAAGATGCTACAAATGGATTCAAAGAGTTCAATGAGCTTGGAAGGGGGAGTTATGGGTTTGTTTACAAGGCTGCTTTGGCAGACGGCAGAGTGGTTGCTGTGAAGAGGGCTAATGCAGCCACAATTATACACACCAACAACCGCGATTTTGAGATGGAGCTTGAAATCTTGTGCAAGATTAGACATTGTAATATCGTTAACCTGGTTGGTTATTGCGCGGAGATGGGGGAAAGGTTGCTTGTTTACGAGTATATGCCTCATGGAACACTTTATGATCATCTCCATGGTGGCCTTTCTCCTCTTAATTGGACCCTCAGGTTGAAGATTGCTATGCAGGCTGCCAAGGGCCTCGAGTACCTTCACAGGGAGCTTTCACCTCCCATCCCCCACAGGGATCTCAACACCTCAAACATTCTCTTGGATTCAGACTGGGGAGCTCGCATTTCGGATTTTGGACTCATCACTTCCACTGACAAGGACCTTCGTGGGGACTTGGAAACTGATGTTTATAATTTTGGGATTGTGTTGCTTGAGATTCTAAGTGGCAGGAAAGCTTGTGACCCAGATTTCAATCCTCCGGACATAGTAGAGTGGGCAGTGCCATTGATCAAACAGGGCAAGGCGGCTGCTATACTCGATCGCTGCACGCCTCTGCCCAGAAACGTTGAGCCTTTGCTTAGGCTTGCCGATATAGCTGAGCTTTCTGTCAGACACAATCCGGCAGACCGTCCACCTCTGCCGGATATAGCATCTTGGTTGGAGCAAATCGTCAAGGACGGATTAATTTTATAG 2307 0.4989 MLQVSIFLHFLFLFFISATAFGTMGPISASFGKDELFCAIDASGNQNILCFGNNVTSQAPSQSNSSSSSSSSLPYFTSVPAMSGLSGGEGFFCGILANTSQAFCWGAGKPAGDPVLVPPAYRNTAYSRIAAGKSHVCAVRGSYFADRASGSVDCWEVAQTRNNTFYAKQSLAFYDQSVSNLELNDVVSGEDFACGSVRDGGLVCWGPNSKSLQVSNVSDSFSVLASGRNAICGVSNSSGELKCWGEASSYWDPESAGRVQVVSLSAGSKHFCGIRKDSHVVECWGASDSSVVPKGYGFLAIASSDYTTCGIREDDLLLDCWVVNASKPNFDSPLELSSPGLCQKESCGVGEFAFNVSVLNEPDLSSLCVRQDLRICSPCGSNCSRGLFLSSPCGLSNDRVCTPCSLCQNSSCWGVCGIHPTSGLHLHHLLRWVLIIGSSALGVLLILVCGLVARGRRRKGTKKQSNKSCMGKMEQEDDGDLNGLNSTPSIASCPGVPQVFRLSELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLVGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWTLRLKIAMQAAKGLEYLHRELSPPIPHRDLNTSNILLDSDWGARISDFGLITSTDKDLRGDLETDVYNFGIVLLEILSGRKACDPDFNPPDIVEWAVPLIKQGKAAAILDRCTPLPRNVEPLLRLADIAELSVRHNPADRPPLPDIASWLEQIVKDGLIL* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3353 768 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR1 24 766 - -
Amo12g3353 768 Gene3D - 26 173 IPR009091 -
Amo12g3353 768 Gene3D Transferase(Phosphotransferase) domain 1 590 765 - -
Amo12g3353 768 Gene3D Phosphorylase Kinase; domain 1 485 589 - -
Amo12g3353 768 SUPERFAMILY RCC1/BLIP-II 31 290 IPR009091 -
Amo12g3353 768 ProSiteProfiles Protein kinase domain profile. 512 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3353 768 PANTHER OS01G0750732 PROTEIN 24 766 - -
Amo12g3353 768 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Amo12g3353 768 Gene3D - 178 338 IPR009091 -
Amo12g3353 768 Pfam Protein tyrosine and serine/threonine kinase 516 664 IPR001245 GO:0004672|GO:0006468
Amo12g3353 768 SUPERFAMILY Protein kinase-like (PK-like) 486 759 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3353 Amo-Chr12 122699935 122702727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3353 6 760 Receptor kinase-like Gene Family AT3G59420 31.235 2.68e-110 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Amo12g3353 PK_Tyr_Ser-Thr 7.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3353 - - aip:107626497 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3353 12 122699935 122702727 Amo12g3353 12 122699935 122702727 ECH