Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3352 ATGCCTAATTTATTTGGCCGTCTCTTCGTTCACTTAAACACCATCCTTCCATCCCATTTAATTCCTTCTTCGTCTCCACAACCAACAGTTCATTCAGACATGAAGAACCCTTTTTCTCTTTTTGCTTGTTTCTCAGCGTCTTCCAATCAACAAAACAACAACAACGAGGGTGAGAATGATGTTATTGATGAGGACGATGATGGAGCCTTTCGTGTCTTCACTTATAACCAACTGAAAACAGCCACTCGCAATTTTCAAACCTCAGACAAGGTTGGAGAAGGAGGCTTTGGTACTGTGTACAAGGGAAGGCTTGCTGATGGGAGTCTGGTGGCCGTGAAGGTAGTTTCGATTGAGGTGGAATCGATGCGAGGAGAGAGTGAATTCGTGGCGGAATTGGCTTCCCTTGCAAATATCAGGCACCAAAATCTTGTTAGACTGAGAGGGTGTTGCGTGGAAGGAGCTCATAGATATTTGGTGTATGAGTACATGGACAACAATAGTCTTTACCAAACCTGTTTGCGTTCGGAGGAAGGGAGGATGAGATTCAAGTGGGAAGCAAGGAAGGAAGTTTCCACAGGTGTGGCTCACGGCCTTACCTATCTCCATCAACACCTTAGGCCTCACGTTGTCCATAGAGACATCAAAGCCAGTAACATACTCCTTGATACTAATTTTATGCCTAAGATTTCTGACTTTGGCTTAGCTAAACTTTTAAGAGACGAAACGTCTTATATTAGTACTAAAGTAGCAGGGACATTGGGTTATCTTGCACCAGAATATGCTAGTTCTGGACGATTCACAAGAAAATCAGATGTTTATAGTTTTGGAGTTTTGCTTTTACAAATTGTTAGTGGTCTACCAGTTGTGGATGCCTATCAAGATACTGATCGTTTCATCGTACAAAAGGCATGGAAAGCATATGAAGAGAACAACCTAATAAGAATGGTGGATCCTATGCTTAATATGAACTTTTCGGCGGAAGAGGTGATTAGATTCTTGAAGGTGGGTTTGCTTTGCGTGCAAGAAACAGCAAAGCTGAGGCCAATAATGTTAGAGGTTGTGGAGATGTTGACCAACAACAATGCTGACATGAATGACATTCGCATTTCCAAACCTGGCTTTGTTGCTGATCTTAGGAACATTAGAATCAAGAAACAAGAAGGAGCAATGCACTCATCAAAGGAATCATCAAGTTACAGTGGAGCAACCTTTGCTGCAAGTCCAAGCTCCATTTTGACTACTATGATGAATGTTGGTCGTTAG 1263 0.422 MPNLFGRLFVHLNTILPSHLIPSSSPQPTVHSDMKNPFSLFACFSASSNQQNNNNEGENDVIDEDDDGAFRVFTYNQLKTATRNFQTSDKVGEGGFGTVYKGRLADGSLVAVKVVSIEVESMRGESEFVAELASLANIRHQNLVRLRGCCVEGAHRYLVYEYMDNNSLYQTCLRSEEGRMRFKWEARKEVSTGVAHGLTYLHQHLRPHVVHRDIKASNILLDTNFMPKISDFGLAKLLRDETSYISTKVAGTLGYLAPEYASSGRFTRKSDVYSFGVLLLQIVSGLPVVDAYQDTDRFIVQKAWKAYEENNLIRMVDPMLNMNFSAEEVIRFLKVGLLCVQETAKLRPIMLEVVEMLTNNNADMNDIRISKPGFVADLRNIRIKKQEGAMHSSKESSSYSGATFAASPSSILTTMMNVGR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3352 420 ProSiteProfiles Protein kinase domain profile. 85 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3352 420 Gene3D Transferase(Phosphotransferase) domain 1 163 371 - -
Amo12g3352 420 PANTHER RECEPTOR-LIKE KINASE 42 386 - -
Amo12g3352 420 CDD STKc_IRAK 91 359 - -
Amo12g3352 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Amo12g3352 420 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 42 386 - -
Amo12g3352 420 SUPERFAMILY Protein kinase-like (PK-like) 69 358 IPR011009 -
Amo12g3352 420 ProSitePatterns Protein kinases ATP-binding region signature. 91 113 IPR017441 GO:0005524
Amo12g3352 420 Gene3D Phosphorylase Kinase; domain 1 54 162 - -
Amo12g3352 420 Pfam Protein kinase domain 85 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3352 420 SMART serkin_6 85 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3352 Amo-Chr12 122697265 122698960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3352 73 377 Receptor kinase-like Gene Family AT1G56120 48.366 3.94e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo12g3352 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3352 - - gmx:100813945 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3352 12 122697265 122698960 Amo12g3352 12 122697265 122698960 ECH
Amo16g1820 16 41651059 41653803 Amo12g3352 12 122697265 122698960 PCT
Amo12g3352 12 122697265 122698960 Amo16g1820 16 41651059 41653803 PCT