Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3341 ATGCCTCCGATCCAAGAAACCGACCCGATACAAGACACAACCATCGCCGACCACCAGAAGAAAACCAACAAGAAGAGGATGGCCAAGGATGCCGGTGGCGGCGGCGGCGGCTCTGCCGCGGGACCAATGAGGTACCGCGGCGTCAGGCGGAGGTCGTGGGGGCGTTATGCGGCGGAGATAAGGGACCCGCAGTCGAAGGAGCGGCGGTGGCTGGGGACGTTCGACACGGCGGAGGAAGCTGCTTGCGCCTACGACTGTGCCGCCAGAGCGATGCGAGGCGCGAAGGCGAGGATGAACTTCGTGTACCCTGATTCTCCTCCTCATCCTCATCCACACCATCACCATCATAATTTTCGTCACTCTGAACTGTTCCAAGCGTTCAACTTCCCGAAGCAGCAGTGCCACGTCAGCAAGTTAGTTCAGAGCGGCCGCCATGGCGTAACTGCTCCATTATCGACTCAGCAGCAGCACCGAAACATCACTAACAATTCTCATCATTCCCTGAACATGCTTCTATTTCGCGAGTTTCTGAATTCGAATCTATGTTTGGTTTCTTCTTCTTCTGCTGCTACTGGTGGTGTTGGTTCCAGTGGTGCTAATAATAGTCCTTATCAGTATTGCATCAAGGAAGGTGGTTCGGCTTGCTGCTTCAACGGTAACTGTTGCGGTGGTGGTTCCAACAACGGCACGACGGAGGTTATTGCTGAAGGTGTTGAGGAAGAAGATCAGTCGTTATTGGAGTTGTTCCCTAGAGAGTCTTCAGACTTTGGCCTGTTGGAAGAGATAGTTCAACGCTTCTTGCCGAAATCCAAAACCGTTCCAAACAAGAATTGCGACAGCTCTTTGAAGCTGAAACCCGAGGCCGTGGCAATTTCGTTTCCTCATCATCAACAACAACAGGGCTATGATGATAACAGCAGGATGATGAGGGGATAA 936 0.5267 MPPIQETDPIQDTTIADHQKKTNKKRMAKDAGGGGGGSAAGPMRYRGVRRRSWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGAKARMNFVYPDSPPHPHPHHHHHNFRHSELFQAFNFPKQQCHVSKLVQSGRHGVTAPLSTQQQHRNITNNSHHSLNMLLFREFLNSNLCLVSSSSAATGGVGSSGANNSPYQYCIKEGGSACCFNGNCCGGGSNNGTTEVIAEGVEEEDQSLLELFPRESSDFGLLEEIVQRFLPKSKTVPNKNCDSSLKLKPEAVAISFPHHQQQQGYDDNSRMMRG* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3341 311 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Amo12g3341 311 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Amo12g3341 311 MobiDBLite consensus disorder prediction 1 46 - -
Amo12g3341 311 MobiDBLite consensus disorder prediction 13 28 - -
Amo12g3341 311 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Amo12g3341 311 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Amo12g3341 311 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Amo12g3341 311 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 13 296 - -
Amo12g3341 311 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Amo12g3341 311 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 296 - -
Amo12g3341 311 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Amo12g3341 311 CDD AP2 44 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3341 Amo-Chr12 122580832 122582232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3341 23 271 AP2-EREBP Transcription Factor Family AT1G12980 38.153 2.53e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo12g3341 AP2 4.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3341 - - ahf:112736058 508.064