Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3328 ATGGACCTGAATGACATTAGAGATGCATTTGACCATGTGGCAAAGAAGCAGAAGTTATCTTATTCCAAGTCTCAAGACATTGTTGACCAGATTGGCCATGAAATTGAGCAGGCACTGATATCAATTCAGTTAGCTCAGGAGAGCCAGAAATCCATTCTTACAGAACTTATGCTTAAGCTTAATGCTATCGGGGCACTTCAACAATTAGAAGGATCACAGAAGGAATTGAACATAAGTGTTACCAAGTACCAAAAGCTCCTGGACAAGCTATTATACCCAGATATATCCAAGGTATACAGAACTGCTGACTATGATGCTCACGTTGTAAACCAAATCTTGGCCAACCACTTCTACCATCAAGGTTTATTTGATGTTGGAGATAGCATCATGAAAGAGGCTGGTGAGCCTGAAGCAACTGCACTGAGATCTCTGTTCTTGGAAATGCATCAGATTCTAGAAGCTATGAGGGTTAAAAACATCCAGCCCGCTCTCACATGGGTCTCTGCCAACCGAGAGAAACTTCCCCAGAATGGTACCAATCTCGAGCTTAGAATACACAGGCTGCAATTTATAGAGCTCCTGCGAAATGGAAACCGAGCAGATGCCTTAAAATATGCCCGGACTTATCTTGCTCCTTTGGCTTCCCTCCACGAGAACGATTTCCAAAAGCTTATGGGTTGCCTTTTATATTCTGGAAGGGTTGAGAACTCCCCCTACCCTGACTTGGTCTGCCCATCCAATTGGACTGAGATAACTGAGGAGCTTAATAGGCAGTTTTGCACTCTCTTTGGACAGTCCTACAAGAGTCCTTTGAGTGTAGCAATGGCAGCTGGATTTGAGGGGTTGCCTACACTCTTAAAGCTGGCAAATGTGATGGCCGTAAAGAAGCACGAGTGGCAGTCGATGAAACAGTTGCCGGTGCCACTAGAACTTGGGAAGGAATTCCATTTTCATTCCATTTTTGTTTGCCCTGTGAGTAGGGATCAATGTAGTGAAGAAAACCCCCCAATGCTGCTGCCCTGTTATCATGTTCTCTGCAAGCAATCAATTATGAGGTTATCAAAAAGCAGCGCACAAGTATTCAAGTGTCCGTATTGTCCAGCAGTAGCTACGGTTGCACAGTGCAGACAACTCTATTTCTGA 1143 0.4427 MDLNDIRDAFDHVAKKQKLSYSKSQDIVDQIGHEIEQALISIQLAQESQKSILTELMLKLNAIGALQQLEGSQKELNISVTKYQKLLDKLLYPDISKVYRTADYDAHVVNQILANHFYHQGLFDVGDSIMKEAGEPEATALRSLFLEMHQILEAMRVKNIQPALTWVSANREKLPQNGTNLELRIHRLQFIELLRNGNRADALKYARTYLAPLASLHENDFQKLMGCLLYSGRVENSPYPDLVCPSNWTEITEELNRQFCTLFGQSYKSPLSVAMAAGFEGLPTLLKLANVMAVKKHEWQSMKQLPVPLELGKEFHFHSIFVCPVSRDQCSEENPPMLLPCYHVLCKQSIMRLSKSSAQVFKCPYCPAVATVAQCRQLYF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3328 380 SUPERFAMILY RING/U-box 317 376 - -
Amo12g3328 380 PANTHER PROTEIN RMD5 HOMOLOG 1 380 - -
Amo12g3328 380 SMART toby_final6 197 291 IPR013144 -
Amo12g3328 380 CDD dRing_Rmd5p_like 321 368 IPR037683 -
Amo12g3328 380 Pfam CTLH/CRA C-terminal to LisH motif domain 145 285 IPR024964 -
Amo12g3328 380 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 145 201 IPR006595 -
Amo12g3328 380 SMART ctlh 144 201 IPR006595 -
Amo12g3328 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 379 IPR013083 -
Amo12g3328 380 ProSiteProfiles Gid-type RING finger profile. 323 366 IPR044063 GO:0061630
Amo12g3328 380 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 1 380 IPR045098 GO:0004842|GO:0043161
Amo12g3328 380 ProSiteProfiles LIS1 homology (LisH) motif profile. 105 137 IPR006594 GO:0005515
Amo12g3328 380 Pfam RING-type zinc-finger 323 364 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3328 Amo-Chr12 122433820 122436609 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3328 K23333 - gmx:100799584 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0095 16 1266660 1268512 Amo12g3328 12 122433820 122436609 PCT
Amo12g3328 12 122433820 122436609 Amo16g0095 16 1266660 1268512 PCT