Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3312 ATGGAGAAACCAAATTCAACAACCCTAGCAAGAACAAAATCAGACCAATTAATAGAATCTATGGCGGCGGCTTTAAAATCGCCGCAATCAAGTGACCACTCATCCGGAATGCCAGATAGTGGTGGTGGTGGTGGTGGCAGTGGTACGCTATCAAGGAAGTCGAGCCGGCGGATGATGGTGGCGGCTTCCCCGGGGCGCGGGGGAGGAAAGAACACACACATAAGGAAATCAAGGAGTGCTCAAATAAGCCAAATGAAGTTTGAATTGGATGATTTGAGCAGTGGTGCTGCACTTAGTAGAGCTTCAAGTGCAAGCTTAGGTTTCTCATTCTCATTCACTGGATTCACTATGCCACCTGATGAAATTGCTGATTCTAAACCCTTCAGTGATGATGATATTCAATTTTCTACCTTGGATCATATCATGAAGAAAAGTTCAACTATGTGTGTTGCAGCTGAAGATATTGAAGCTGGAACTAAGACAATAAAGTTTCGAACTGAGCCTACTATTCCGATCTATCTTAAGTTCAAAGATGTGAGCTACAAGGTAGTAATGAAAGGCATGACAACAAGTCATGAAAAGGATATATTGAATGGGATAAGTGGATGTGTGAATCCAGGTGAAGTCTTGGCTTTAATGGGTCCCTCAGGCAGTGGAAAAACCACTCTTTTGAATCTCTTAGGTGCTAGAATATGCCATTCCACTATCTCTGGTTCCATCACTTACAATGATCAATCATATTCCAAGTTCTTGAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTCTGTTTCCTCACTTAACTGTCAAAGAAACATTGACATATGCAGCCAGGCTTAGACTTCCAAAGACATACACAAAGGAGCAAAAGGAAAAGAGAGCTCTTGATGTTATCTATGAGCTTGGTTTGGAGAGGTGTCAAGACACAATGATTGGAGGTTCCTTTGTTCGTGGAGTATCAGGTGGAGAGAGGAAGAGAGTTTGTATTGGAAATGAGATCATAATCAATCCTTCTCTTCTTTTTCTTGATGAACCAACTTCTGGTTTGGATTCAACAACAGCATTGAGAATAGTTCAGATGCTTCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACAACAATTCACCAACCATCAAGTAGACTCTTTCACAAGTTTGACAAGTTGATCCTTCTTGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCTGAAGCAATGAATTACTTCCAATCTATAGGGTGTTCGCCTCTTATTTCGATGAATCCGGCCGAGTTCTTGCTAGACCTTGCCAATGGAAACATAAATGATGTTTCTCTTCCATCAGAGTTGGAGGACAGAGTTCAAATGGGAACTGTAGAATCTGAAAGACATAGTGGCAAGCCATCTCCAGCAGTAGTACATGAGTATTTGGTGGAGGCATATGAGTCTCGTGTCGCGGAAACAGAGAAGAAAAAGATAATGGCTCCTTCCCCTCTTGATGAAGAAGTTAAGTCCAAAGTTCGTAGTTCTAAGAGGGAATGGGGAGCAAGTTGGTATGAGCAATTCTCTATATTGTTCTGGAGAGGAATCAAAGAAAGGAAGCATGATTATTTCAGTTGGTTGAGAATCACACAAGTTCTGTCCACTGCAATCATATTGGGATTACTTTGGTGGCAATCAGATACTAAGAACATAAAAGATCTGCAAGATCAGGCTGGACTGCTCTTCTTTATAGCTGTCTTCTGGGGATTCTTCCCTGTATTCACTGCAATATTCACATTTCCTCAAGAGAGAGCAATGCTGAGTAAGGAGCGAGCGGCCGATATGTACAGACTAAGTGCATATTTCTTGGCCAGAACCACAAGTGACCTTCCACTAGACTTGATATTACCAGTACTATTTCTCCTTGTTGTTTACTTCATGGCTAGTTTGAGACTCAGTGCTACTCCCTTTGTCCTCACCATCCTCACTGTTTTCCTCTGCATCGTGGCGGCTCAGGGACTTGGACTTGCTATTGGAGCAACACTCATGGATTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTCATGACTTTCATGCTGGCTGGAGGGTTCTTTGTGCAGAGAGTTCCCATATTCATTTCTTGGATCCGGTACATGTCTTTCAATTACCACACCTACAAACTGCTGCTAAAGGTGCAATATGAACACCTAACTCCAGTTGTAAATGGGATCAAAATTGACAGTGGTTTGACAGAGGTTGCTGCTCTGATAGCCATGGTTTTCGGCTACCGGTTCTTGGCTTATCTTTCCTTGCGGCGGATGAAGCTTCAATCCGGAGCATGA 2313 0.4259 MEKPNSTTLARTKSDQLIESMAAALKSPQSSDHSSGMPDSGGGGGGSGTLSRKSSRRMMVAASPGRGGGKNTHIRKSRSAQISQMKFELDDLSSGAALSRASSASLGFSFSFTGFTMPPDEIADSKPFSDDDIQFSTLDHIMKKSSTMCVAAEDIEAGTKTIKFRTEPTIPIYLKFKDVSYKVVMKGMTTSHEKDILNGISGCVNPGEVLALMGPSGSGKTTLLNLLGARICHSTISGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSLPSELEDRVQMGTVESERHSGKPSPAVVHEYLVEAYESRVAETEKKKIMAPSPLDEEVKSKVRSSKREWGASWYEQFSILFWRGIKERKHDYFSWLRITQVLSTAIILGLLWWQSDTKNIKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMASLRLSATPFVLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQRVPIFISWIRYMSFNYHTYKLLLKVQYEHLTPVVNGIKIDSGLTEVAALIAMVFGYRFLAYLSLRRMKLQSGA* 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3312 770 Pfam ABC transporter 197 348 IPR003439 GO:0005524
Amo12g3312 770 Gene3D - 173 414 IPR027417 -
Amo12g3312 770 Pfam ABC-2 type transporter 515 724 IPR013525 GO:0016020|GO:0140359
Amo12g3312 770 MobiDBLite consensus disorder prediction 23 37 - -
Amo12g3312 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 412 IPR027417 -
Amo12g3312 770 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 174 420 IPR003439 GO:0005524
Amo12g3312 770 SMART AAA_5 206 397 IPR003593 -
Amo12g3312 770 CDD ABCG_EPDR 171 402 - -
Amo12g3312 770 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 36 764 - -
Amo12g3312 770 MobiDBLite consensus disorder prediction 21 74 - -
Amo12g3312 770 ProSitePatterns ABC transporters family signature. 320 334 IPR017871 GO:0005524
Amo12g3312 770 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 36 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3312 Amo-Chr12 122173947 122186004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3312 196 434 Calmodulin-binding Proteins AT2G36910 28.571 3.45e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3312 K05681 - gmx:100798801 1215.68