Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3302 ATGGAGGTTCCAGAGATGGAAGGAAAGATTGAAAGCCATACAACATCAGCAGAAGCCTTTGTTGAAGGGGGGATTCAAGAAGCCTGTCATGATGCTTGCAGTATATGCCTTGAGGATTTTTGCGACAGTGATCCTGCGTCGGTGACTAATTGCAAGCATGAGTTCCATCTACACTGCATTCTTGAATGGTGTCAAAGAAGCTCCCAATGTCCCATGTGTTGGCAATCTGTTAGCTTGAAGGATGCTACCAGTCAAGAATTGCTTGAAGCAGTAGAGCAGGAGAGGAGCATAAGGGTTACCCCATCAAGAAATGTTGATATCTTTCATCATCCATCCCTTGATGATCCAGAATTGCAGCAGTTTGAAGAGCGAATAATTCAACATATAGCTGCTGCGGCAGCAATGAGGAGAGCACGGCACCTTGGTCACAGGGAAGGTCCTAGTACTCGGTCATCTTCTCATGGCCATCCACATTTCTTACTATTCTCGGCACAGTCGAGTGCACATCCATCTAGTCCTGAATCTGTTGCCGGAGATGGAAATGAACTGGCTGAAATCCCTGTAGGAAGTCCATCTACGCCACTTACATCTGATGGAGACGAGCCATCAACGTCTCAGCTGATCGCACATATTCAAACTCGGAGCCCTTCTTTAGCTCACAGGTCTACTGTCTCGGCTACAAACCGTGAAGGGATTCAGCCTAATGAAAGTTCTACCACTCATTCTTCGACTTTGGACGGAGACAGAGCAGGGCCGTCCGATCTCCAGTCATTTTCTGATTCTTTGAGGTCCAAATTTAATGCAATGTCCCTGAGATACAAAGAATCGCTTTCGAAGGGCACAAGGGGATGGAAAGAGAGGCTGTTCTCTCGAAATTCTTCTGTGTCAGAACTCGGTTCAGAAGTCAAGAGAGAGTTGAATGCTGGAATTGCGAGTGTATCCCGATTGATGGAGCGCCTCGAATCTAGAGAAAATAATAGAGTTGGGGATGCATCTTTGTCGAATCATTTGGCGGATTCCTCCATCCCTGAGACAAGCAACCAGCACAATGTGGAAGCTCTCCGAAGGAACTCTTCGCGCGGCAATAATTCTCAGGCCACTTTTTCTGCTGGCTCAGATTCAAACTAA 1128 0.4681 MEVPEMEGKIESHTTSAEAFVEGGIQEACHDACSICLEDFCDSDPASVTNCKHEFHLHCILEWCQRSSQCPMCWQSVSLKDATSQELLEAVEQERSIRVTPSRNVDIFHHPSLDDPELQQFEERIIQHIAAAAAMRRARHLGHREGPSTRSSSHGHPHFLLFSAQSSAHPSSPESVAGDGNELAEIPVGSPSTPLTSDGDEPSTSQLIAHIQTRSPSLAHRSTVSATNREGIQPNESSTTHSSTLDGDRAGPSDLQSFSDSLRSKFNAMSLRYKESLSKGTRGWKERLFSRNSSVSELGSEVKRELNAGIASVSRLMERLESRENNRVGDASLSNHLADSSIPETSNQHNVEALRRNSSRGNNSQATFSAGSDSN* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3302 375 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 374 - -
Amo12g3302 375 SMART ring_2 33 73 IPR001841 -
Amo12g3302 375 Pfam Ring finger domain 32 73 IPR001841 -
Amo12g3302 375 Coils Coil 303 323 - -
Amo12g3302 375 MobiDBLite consensus disorder prediction 136 258 - -
Amo12g3302 375 MobiDBLite consensus disorder prediction 190 258 - -
Amo12g3302 375 SUPERFAMILY RING/U-box 27 80 - -
Amo12g3302 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 84 IPR013083 -
Amo12g3302 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 374 - -
Amo12g3302 375 MobiDBLite consensus disorder prediction 152 174 - -
Amo12g3302 375 MobiDBLite consensus disorder prediction 327 375 - -
Amo12g3302 375 MobiDBLite consensus disorder prediction 326 375 - -
Amo12g3302 375 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3302 Amo-Chr12 122057391 122061109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3302 31 81 C3H Transcription Factor Family AT4G00335 49.020 8.02e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3302 K19043 - gmx:100803582 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3302 12 122057391 122061109 Amo12g3302 12 122057391 122061109 ECH