Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3294 ATGGGTCGTGGAAAAACGGTCTATGAATGCATCAAAAAGGAACGAGAACGTAAAATTTCTTTCATGCAAAGAAAAGATGGAATCATGAAGAAAATTGCAACATTTTCAAAGTTATGTAAAGTTGAAGCTTGTCTAATTGTTTATGGAGATGATTCTTCTCAACCAATGACTTGGCCACAAGAACATTCAAAGGTGCAATCCATAATTGAAAAGTACGAGGTTCAAAAGAACAATGAGACACACCCCATAATCTTTGATGAAGAAGAATTTTTCAAGAACAAGAAGATCATGATTGAGGCTGAGATTTCTAAATTGAGAAAGAAGGTACTCAAATTCAAGTATCCTACCATGGATCCAATTTTTACCACCTTAGATGGGAACCAATTGATGGAGTTCATTGCTTTGGTGAACACTAAAATTGAAACTTGTAAGAAAAGAATTGACATGTTGAAGGAGAGTAATCAAGATAATGGTAGCAACTTCAATGTTGACCAAAGTCAAAGTCAACTCAATTTCGTGAACAACATTCCTAATCATGATTATGCTCTTCATCATGATAATTTGGTATATCAAACTCAAAACCCTAAGTTTGATCCAAATGTTACTTATTTTGTGGCAAACAACAATGGGGTGATTATGGATTCTACTAGCCAAGTTAATGTGTCTCTAAATTGTTCTACTACAAATCAAGTTGCGGTTATGGATTCTAAAGAAAAGAGTGTTATTGTGGATTCTACAAATCAAATCAGTGAAAATGGTGGTCTTATTAATTGGAATGATTTTGTTGAGGTTGAGAATTGGATTGATCAACTTCAATATGAGACTGATTTAAAAGAGATTCTTTCTCATCAATCTCAGAATGTGTCACAATCTTCACAAATCTTGCCACCAATAACAATGAATGGATTTTTGGCTGATGAGAAGAACAATAACCACCAATTCCAGTCATTCAACATATACAAAGGACCGAAGCCAAAACGCGACTTCCTTGCCCACTGGGTATCCAAAAACGACGACGTCGTTTGCACGCTTCTTATATACGTTGGTGCTGCCTTCCTCTTCACCGTCCTCGTCAATCGCGCCCTCTCCCGCATTGCTCCCGTCGCCGATCCCGGCAGGGTGGTGAAATCCTTCGCTATTATTATGGGTTTGACGAATTTCGTGCTGACCGTGGCTGGTGTGAGTGCGGTGGTGCTTCTTCTGAGGAGCGACGTGAAGCAATCTGCCAACATATTCAGGCGCAATGTTAAGCACATCCGTAACTGGCTCGAAGAAGAAACCGCTGCTTCTTCCAAGGAAATGCAGAAATCTGCAAAAGAATTGGAATCAAAGGTGCCTCCGAAAGAGACTCCTAAGGAGGACAAGCACTAG 1371 0.3917 MGRGKTVYECIKKERERKISFMQRKDGIMKKIATFSKLCKVEACLIVYGDDSSQPMTWPQEHSKVQSIIEKYEVQKNNETHPIIFDEEEFFKNKKIMIEAEISKLRKKVLKFKYPTMDPIFTTLDGNQLMEFIALVNTKIETCKKRIDMLKESNQDNGSNFNVDQSQSQLNFVNNIPNHDYALHHDNLVYQTQNPKFDPNVTYFVANNNGVIMDSTSQVNVSLNCSTTNQVAVMDSKEKSVIVDSTNQISENGGLINWNDFVEVENWIDQLQYETDLKEILSHQSQNVSQSSQILPPITMNGFLADEKNNNHQFQSFNIYKGPKPKRDFLAHWVSKNDDVVCTLLIYVGAAFLFTVLVNRALSRIAPVADPGRVVKSFAIIMGLTNFVLTVAGVSAVVLLLRSDVKQSANIFRRNVKHIRNWLEEETAASSKEMQKSAKELESKVPPKETPKEDKH* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3294 456 MobiDBLite consensus disorder prediction 427 456 - -
Amo12g3294 456 PANTHER OS05G0517800 PROTEIN 381 456 - -
Amo12g3294 456 PANTHER OS05G0517800 PROTEIN 381 456 - -
Amo12g3294 456 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Amo12g3294 456 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Amo12g3294 456 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Amo12g3294 456 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo12g3294 456 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3294 Amo-Chr12 122008991 122013530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3294 1 144 Type I MADS-box Gene Family AT2G28700 31.757 1.46e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo12g3294 SRF-TF 6.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3294 - - adu:107476111 611.683