Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3290 ATGCATGAATCGCGCCATTTCCAAGCGATACAACGGCTAAGAGGATGTGGTGGCCGGTTGAACACAAGAAACTCTGCTATCAACAATGGAAATGGCAAGGGTGGAAGTGAAGCAAACAAAAAAGGACTTGGCCATCAACTACATTCTAGTGGTTCTCAGAATTCTGAAGTCCTACAATCCTCGGCCGGAACCTTGAATTCGTTGAAGGAAATACGTGGAAGCAGTCCAAACATTTCATTAGAGGTGACAAGCATGTACTCATCCAGAGGAATTGATGAATTTGCCATCAATCATATTGGAACTCCTAGCACTCCTTTGCAGATAGGATGGACACTGGACATGGACATGGCATGA 354 0.4463 MHESRHFQAIQRLRGCGGRLNTRNSAINNGNGKGGSEANKKGLGHQLHSSGSQNSEVLQSSAGTLNSLKEIRGSSPNISLEVTSMYSSRGIDEFAINHIGTPSTPLQIGWTLDMDMA* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3290 117 MobiDBLite consensus disorder prediction 43 61 - -
Amo12g3290 117 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 102 - -
Amo12g3290 117 MobiDBLite consensus disorder prediction 21 35 - -
Amo12g3290 117 MobiDBLite consensus disorder prediction 18 61 - -
Amo12g3290 117 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 102 IPR001289 GO:0003700|GO:0006355
Amo12g3290 117 ProSiteProfiles NF-YA/HAP2 family profile. 1 23 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3290 Amo-Chr12 121911202 121912717 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3290 1 66 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.056 4.99e-07 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo12g3290 CBFB_NFYA 0.0004 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3290 K08064 - aip:107628020 137.887