Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3286 ATGAGCAACAACAACACAACTAGTGATTCTTCTTCAGGATTCCTTGGATCCAATGACATAAGTGGATTTGGCTATGGCATTGGAATCTCAATTGGGATTCTTCTACTCATCACAACAATCACACTCACCTCATACTTTTGCACAAGAACACAAGTTCCAAARAYTAACAACAGTAGGAGTAGGAGTAATCCTACTCCAGGTTCAAGGAGGAGCACCCAAGTATTCCTCGAACCGCAACACACGGTGGTCGATGTGGGACTAGATGAAGCAACAATTCTTGGGTACCCAAAGATGCTTTACTCAGAATCAAAGAAACTCAACAAGAAATCTGATGATTCAACATCAACATGTTGTTCAATTTGTCTTGGAGATTATAAGGGAAGTGATATGCTTAGAGTGTTACCAGATTGTGAACATGTTTTTCATCTYAAGTGCATAGATCCATGGTTGAGATTGCATCCAACTTGTCCTCTTTGCAGAACATCACCAATTCCAACACCACTTTCTACTCCTCTTGCTGAGGTTGTTCCATTAGCAACCAGAAGAGATTGA 552 0.404 MSNNNTTSDSSSGFLGSNDISGFGYGIGISIGILLLITTITLTSYFCTRTQVPKXNNSRSRSNPTPGSRRSTQVFLEPQHTVVDVGLDEATILGYPKMLYSESKKLNKKSDDSTSTCCSICLGDYKGSDMLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3286 183 SUPERFAMILY RING/U-box 117 165 - -
Amo12g3286 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 164 IPR013083 -
Amo12g3286 183 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Amo12g3286 183 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 3 183 - -
Amo12g3286 183 CDD RING-H2_PA-TM-RING 117 160 - -
Amo12g3286 183 Pfam Ring finger domain 118 160 IPR001841 -
Amo12g3286 183 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 183 IPR045899 -
Amo12g3286 183 SMART ring_2 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3286 Amo-Chr12 121844843 121845593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3286 10 181 C3H Transcription Factor Family AT5G06490 49.727 2.60e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3286 - - gmx:100796149 239.58