Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3285 ATGGGTATGGAAACTGCATATCTGAAAGAACATGAAGGAATTGTTCACAATTCTGTTGGACAGCTGGCATCAGCAGCAGCAGGTTCTTCATGGTGGAGTATTAGTGCCTTTGGATCTCATCAAAATCAATCATCAGTTTATGGAGATTCGTCTAGTTATAATAATAATAATAATAATAACCAAATTATGAAACCATTTTCATTGGAGCTTCATAATAATAATAATTACATGGACCAACTTTCTTCTTCCACTAATAAGCAACAACAATTCTTGGATAAAGGACCTACAACACAATTTACAATCTTTCCAGAAGATTGCAAAATTTCAGGTGAATCCCAAAAGTCTCAAGCCACATTATCTTTGCAGCCATCAAATGCTGACCCTAGGAACCGTTTTGAGCTTGGATTCACTCAGCCTATGATATGTGCAAAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGGCGTATAATGCTGCCACTAAACTTGACATCAGATGATGGACCAACTTACGTGAATGCTAAGCAATACCATGGAATCATAAGGCGTAGGCAGTCACGTGCCAAAGCTGTTCTTGCCAATAAACTCATCAAACGCCGCAAGCCATATATGCATGAATCGCGCCATCTCCACGCGATGCGACGGCCAAGAGGATGTGGTGGCAGGTTCTTGAACACAAGAAACTCTGCCACCAACAATGGAAATGGCAAGAGTGGAAGTGAAGCAAACAAAAAAGGACTTGGCCATCAACTACATTCTAGTGGTTCCCAGAGTTCTGAAGTCCTACAATCTTCGGCCGGAACGTTGAATTCGTTGAAGGAAACAAATGGAAGCAGTCCAAATATTTCATTAGAGGTGACAAGCATGTACTCATCAAGAGGAATTGATGGATTTGCCATCAATCACATTGGAACTCCTATGCACTCCCTTGCAGATATGATGGACACTGGACATGGACATGGCATGATCATGCCCCCGAAATGGGTTTCAGCTGCGGCTGGAAACTGCTGCAACCTTAATGTTTGA 1053 0.415 MGMETAYLKEHEGIVHNSVGQLASAAAGSSWWSISAFGSHQNQSSVYGDSSSYNNNNNNNQIMKPFSLELHNNNNYMDQLSSSTNKQQQFLDKGPTTQFTIFPEDCKISGESQKSQATLSLQPSNADPRNRFELGFTQPMICAKYPYMDQFYGLFSAYAPQISGRIMLPLNLTSDDGPTYVNAKQYHGIIRRRQSRAKAVLANKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSATNNGNGKSGSEANKKGLGHQLHSSGSQSSEVLQSSAGTLNSLKETNGSSPNISLEVTSMYSSRGIDGFAINHIGTPMHSLADMMDTGHGHGMIMPPKWVSAAAGNCCNLNV* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3285 350 Gene3D - 175 237 - -
Amo12g3285 350 MobiDBLite consensus disorder prediction 233 249 - -
Amo12g3285 350 PRINTS CCAAT-binding transcription factor subunit B signature 178 200 IPR001289 GO:0003700|GO:0006355
Amo12g3285 350 PRINTS CCAAT-binding transcription factor subunit B signature 209 232 IPR001289 GO:0003700|GO:0006355
Amo12g3285 350 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 349 IPR001289 GO:0003700|GO:0006355
Amo12g3285 350 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 178 232 IPR001289 GO:0003700|GO:0006355
Amo12g3285 350 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 349 - -
Amo12g3285 350 ProSiteProfiles NF-YA/HAP2 family profile. 175 235 IPR001289 GO:0003700|GO:0006355
Amo12g3285 350 MobiDBLite consensus disorder prediction 256 273 - -
Amo12g3285 350 SMART cbf3 174 235 IPR001289 GO:0003700|GO:0006355
Amo12g3285 350 MobiDBLite consensus disorder prediction 224 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3285 Amo-Chr12 121827556 121832672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3285 132 348 CCAAT-HAP2 Transcription Factor Family AT3G05690 47.845 1.10e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo12g3285 CBFB_NFYA 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3285 K08064 - gmx:100808195 404.445