Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3276 ATGATACAAAACTACAAAATTCTCAAAAATGAAATGAAATTCATTCTTGGTAACTTAATTATTCATGGATACATAAGTTTCATTTCTTGTTCTTTCCTTTCTAGATATGTGCAGAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTTGGGGGCATATAATGCTGCCACTAAACTTGACATCAGATGATGGACCAACTTACGTGAATGCTAAGCAATACCATAGGCAGTCACGTGCTAAAGCTGTTCTTGCCAATAAACTCATAAAACGTCGCAAGCCATATATGCATGAATCGTGCCATCTCCACGCGATGCGACGGCCAAGAGAATGTGGTGGCAGGTTCTTGAACACAAGAAACTCTGCCACCAACAATGGAAATGGCAAGATTGGAAGTGAAGCAAACAAAAAAGCACTTGGCCAACAACTACATTCTAGTGGTTCTCAGAGTTCTGAAGTCCTACAATCCTCCGCCGGATCCTTGAATTCGTTGAAGGAAACAAATGGAAGCAGTTCAAACATTTCATCAGAGGTGACAAGCATGTACTCATCAAGAGGAGGAATTGATAGATTTGCCATCAATCACATTGGAACTCCTATGCAGTCCCTTGCAGATATGATGGACACTGGACATGGACATGGCATGATCATGCCCCGAAATGGGTTTCGGCTGCGGCCGGAAACTGCTGCAACCTTAATGTTTGATCTGGCAAGGATATTAAGCGAGTTTTGGTGTAGCATTGCACCAAAATCCTCGTATCCTTGTCAGGCCAGATGGAAAATGCTATTTTCCTTTCTGGTGCTTAGGCAACTCATCCTTGGCTCAATTATATTCTCTATCAATCTTAAAAGTATGTTACTTTAA 885 0.409 MIQNYKILKNEMKFILGNLIIHGYISFISCSFLSRYVQNILTWINFMDSSQLMHLKFWGHIMLPLNLTSDDGPTYVNAKQYHRQSRAKAVLANKLIKRRKPYMHESCHLHAMRRPRECGGRFLNTRNSATNNGNGKIGSEANKKALGQQLHSSGSQSSEVLQSSAGSLNSLKETNGSSSNISSEVTSMYSSRGGIDRFAINHIGTPMQSLADMMDTGHGHGMIMPRNGFRLRPETAATLMFDLARILSEFWCSIAPKSSYPCQARWKMLFSFLVLRQLILGSIIFSINLKSMLL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3276 294 SMART cbf3 69 125 IPR001289 GO:0003700|GO:0006355
Amo12g3276 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 58 240 IPR001289 GO:0003700|GO:0006355
Amo12g3276 294 MobiDBLite consensus disorder prediction 120 183 - -
Amo12g3276 294 Gene3D - 70 127 - -
Amo12g3276 294 ProSiteProfiles NF-YA/HAP2 family profile. 70 125 IPR001289 GO:0003700|GO:0006355
Amo12g3276 294 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 73 122 IPR001289 GO:0003700|GO:0006355
Amo12g3276 294 MobiDBLite consensus disorder prediction 145 183 - -
Amo12g3276 294 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 58 240 - -
Amo12g3276 294 MobiDBLite consensus disorder prediction 123 138 - -
Amo12g3276 294 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3276 Amo-Chr12 121726525 121729076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3276 59 188 CCAAT-HAP2 Transcription Factor Family AT5G06510 48.175 3.70e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo12g3276 CBFB_NFYA 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3276 K08064 - gmx:100527677 200.29