LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g3276	ATGATACAAAACTACAAAATTCTCAAAAATGAAATGAAATTCATTCTTGGTAACTTAATTATTCATGGATACATAAGTTTCATTTCTTGTTCTTTCCTTTCTAGATATGTGCAGAATATCCTTACATGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTTGGGGGCATATAATGCTGCCACTAAACTTGACATCAGATGATGGACCAACTTACGTGAATGCTAAGCAATACCATAGGCAGTCACGTGCTAAAGCTGTTCTTGCCAATAAACTCATAAAACGTCGCAAGCCATATATGCATGAATCGTGCCATCTCCACGCGATGCGACGGCCAAGAGAATGTGGTGGCAGGTTCTTGAACACAAGAAACTCTGCCACCAACAATGGAAATGGCAAGATTGGAAGTGAAGCAAACAAAAAAGCACTTGGCCAACAACTACATTCTAGTGGTTCTCAGAGTTCTGAAGTCCTACAATCCTCCGCCGGATCCTTGAATTCGTTGAAGGAAACAAATGGAAGCAGTTCAAACATTTCATCAGAGGTGACAAGCATGTACTCATCAAGAGGAGGAATTGATAGATTTGCCATCAATCACATTGGAACTCCTATGCAGTCCCTTGCAGATATGATGGACACTGGACATGGACATGGCATGATCATGCCCCGAAATGGGTTTCGGCTGCGGCCGGAAACTGCTGCAACCTTAATGTTTGATCTGGCAAGGATATTAAGCGAGTTTTGGTGTAGCATTGCACCAAAATCCTCGTATCCTTGTCAGGCCAGATGGAAAATGCTATTTTCCTTTCTGGTGCTTAGGCAACTCATCCTTGGCTCAATTATATTCTCTATCAATCTTAAAAGTATGTTACTTTAA	885	0.409	MIQNYKILKNEMKFILGNLIIHGYISFISCSFLSRYVQNILTWINFMDSSQLMHLKFWGHIMLPLNLTSDDGPTYVNAKQYHRQSRAKAVLANKLIKRRKPYMHESCHLHAMRRPRECGGRFLNTRNSATNNGNGKIGSEANKKALGQQLHSSGSQSSEVLQSSAGSLNSLKETNGSSSNISSEVTSMYSSRGGIDRFAINHIGTPMQSLADMMDTGHGHGMIMPRNGFRLRPETAATLMFDLARILSEFWCSIAPKSSYPCQARWKMLFSFLVLRQLILGSIIFSINLKSMLL*	295

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo12g3276	294	SMART	cbf3	69	125	IPR001289	GO:0003700\|GO:0006355
Amo12g3276	294	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	58	240	IPR001289	GO:0003700\|GO:0006355
Amo12g3276	294	MobiDBLite	consensus disorder prediction	120	183	-	-
Amo12g3276	294	Gene3D	-	70	127	-	-
Amo12g3276	294	ProSiteProfiles	NF-YA/HAP2 family profile.	70	125	IPR001289	GO:0003700\|GO:0006355
Amo12g3276	294	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	73	122	IPR001289	GO:0003700\|GO:0006355
Amo12g3276	294	MobiDBLite	consensus disorder prediction	145	183	-	-
Amo12g3276	294	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR	58	240	-	-
Amo12g3276	294	MobiDBLite	consensus disorder prediction	123	138	-	-
Amo12g3276	294	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	30	-	-

Showing 1 to 10 of 10 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g3276	Amo-Chr12	121726525	121729076	Wgd

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g3276	59	188	CCAAT-HAP2 Transcription Factor Family	AT5G06510	48.175	3.70e-26	100

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Amo12g3276		CBFB_NFYA	1.6e-16	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g3276	K08064		-	gmx:100527677	200.29

Showing 1 to 1 of 1 entries