Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3270 ATGAATGACTTGTTCTCCGGCTCCTTCTCCCGCTTCCGCAGCACCGATCAAGTCTCTCCGGACAACCAACACCATGTCATCGAGATGGGCGCGACCGACGGCAACGTCCACCTCGACAAGTTCTTCGAGGAAGTGGAGGTCGTAAAGGAGGAGCTGAAGGAGTTGGAGAAGCTCCATGAGAGCCTAAGAGTGTCCCATGAAAGGAGCAAGACCCTTCACAGCGCTAGAGCCGTGAAAGATCTTAGAGCCAGCATGGATGCTGACGTGGCAATAGCACTTAAAAAGGCCAAGCTTGTCAAGGTCCGACTCGAGGCACTAGACAGGTCCAACGCAGCAAGCCGAAGCTTGCCTGGTGCTGGACCTGGATCTTCCTCGGATCGGACCAGGACATCCGTGGTGAGTGGATTGAGGAAGAAGTTGAAAGATTCCATGGACAGCTTCAACAACCTTAGACAACAAATATCCTCAGAGTACAGAGAGACCGTACAACGTAGATACTATACTGTCACTGGAGAGAATCCTGATGAAAAAACCGTTGATCTTCTCATCTCTACTGGTGAGAGTGAAACCTTTTTGCAAAAAGCAATTCAGCAACAGGGGAGAGCAACAATCATGGACACAATCCAAGAGATTCAAGAGAGGCATGACACAGTTATGGAGATAGAGAGGAGCCTCAATGAGCTTCACCAAGTGTTCTTGGACATGGCTGTTTTGGTCCAATCACAAGGTGAGCAAATAGATGACATAGAGAACCACGTGGCAAGAGCTAATTCGTATGTCCGCGGCGGGGTCCAGCAGCTCCAGGTTGCAAGGAAGCACCAGAAGAATACCCGGAAGTGGACCTTAATTGCCATCATAATATTGATCATTATCATATTGATTATAGTTCTTCCTATTGTTTTAAAAAATTGA 912 0.4814 MNDLFSGSFSRFRSTDQVSPDNQHHVIEMGATDGNVHLDKFFEEVEVVKEELKELEKLHESLRVSHERSKTLHSARAVKDLRASMDADVAIALKKAKLVKVRLEALDRSNAASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQQISSEYRETVQRRYYTVTGENPDEKTVDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDTVMEIERSLNELHQVFLDMAVLVQSQGEQIDDIENHVARANSYVRGGVQQLQVARKHQKNTRKWTLIAIIILIIIILIIVLPIVLKN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3270 303 Pfam SNARE domain 244 296 IPR000727 -
Amo12g3270 303 CDD SynN 38 195 IPR006011 GO:0016020
Amo12g3270 303 SMART tSNARE_6 203 270 IPR000727 -
Amo12g3270 303 PANTHER SYNTAXIN 17 298 IPR045242 -
Amo12g3270 303 MobiDBLite consensus disorder prediction 112 133 - -
Amo12g3270 303 Gene3D - 197 301 - -
Amo12g3270 303 Gene3D - 35 168 - -
Amo12g3270 303 SMART SynN_4 33 159 IPR006011 GO:0016020
Amo12g3270 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Amo12g3270 303 MobiDBLite consensus disorder prediction 116 131 - -
Amo12g3270 303 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo12g3270 303 Coils Coil 38 65 - -
Amo12g3270 303 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 17 298 - -
Amo12g3270 303 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Amo12g3270 303 CDD SNARE_syntaxin1-like 207 268 - -
Amo12g3270 303 Pfam Syntaxin 40 243 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3270 Amo-Chr12 121647358 121650237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3270 30 282 SNARE and Associated Proteins AT3G11820 74.308 8.20e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3270 K08486 - gmx:100808718 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3270 12 121647358 121650237 Amo12g3270 12 121647358 121650237 ECH