Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3260 ATGATTGCAGCAATGACTGAAGAGGAGCTAGATGCTCTTTTAATGCATTCTTGGGATGACATCCTTTCAAAGATGGATATAGAGGATAACCCAGAAAAGATGAAAGAGGAACTGGATGCCTTTTTCATGATGGATACGAAAGAGAATTGGGAGGAGACGGAAGCTACCAAGCATTCTCAGCCTCAGCCTCAGCTCCAGCCTCATACAACGAACATGGAAGAGCAATGTGCCATTGACGTCCATGTTAATCAACCACCTCAGCTAGAATCTCCGCCTCAGCCTTGCTCCCAGCTTCTGCCTCTGCCTCAGCCTCAGCAAGAATCTCCGCTTCAGTCTCAAAATCAATCCAAGTCGCAGATGGATATAAGCAAGATGACCGATCAGTTTTTCAATGACACTTGGGGTTATCAACCACCGTTAGAGATGATGGGTGGTCATCAACCACTTCAATCTCAGCCGCAACCTCAGGTCTGGACGTGGGAGGAGAACAAAGCCTTTGAGTCGGTTATCTCCAATTGTTTCCAGGATGCTATACACAAACGCTGGCAAACTGTGGCCGCTCGCCTCCCTGGAAAGACTCCGGCACAGCTGCAAGAACGATTCTTGAAACTGATGACCGACGTTAATGCCATAAAAAACGGTTATCCTGAGAACATGATGATACCTGTGCCTGCTACCCCATTGGAACACAGCCCTCTCTCCATTCCCATCGTCAATGCAACACCACCACCTCCACCGCCTCATTGGACTCATCATCAACATCTTCACAGGATGGAGGCAATGGCAGTCKCGGCAGACATGGCAGTGCCAATGCAAATTACCTTACCGTTATCAGCCAACAGTAACATAATCCAACACCAACCTTTACCTGTGGCTTCTAGTGACAACAATAAACGGCAACAAACAGTTCATTGGACTTTACAAGAGCACAAGTTGTTTCTCCAAGGCTACGAAGAATTAGGAAAACAATGGTCAAGAATTTCAAGTGAATATGTTAAAACAAGAACTTATGCACAAGTTGTTAGTCACTCTCAAAATTTTTTTGAACGCCAGGAGAAAAGAGCTAGAGGAGAAAATCTAACAAGAAAGAGTATACATGACATAACTGATTATCGGTTTACTTTGCTGTAA 1131 0.45 MIAAMTEEELDALLMHSWDDILSKMDIEDNPEKMKEELDAFFMMDTKENWEETEATKHSQPQPQLQPHTTNMEEQCAIDVHVNQPPQLESPPQPCSQLLPLPQPQQESPLQSQNQSKSQMDISKMTDQFFNDTWGYQPPLEMMGGHQPLQSQPQPQVWTWEENKAFESVISNCFQDAIHKRWQTVAARLPGKTPAQLQERFLKLMTDVNAIKNGYPENMMIPVPATPLEHSPLSIPIVNATPPPPPPHWTHHQHLHRMEAMAVXADMAVPMQITLPLSANSNIIQHQPLPVASSDNNKRQQTVHWTLQEHKLFLQGYEELGKQWSRISSEYVKTRTYAQVVSHSQNFFERQEKRARGENLTRKSIHDITDYRFTLL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3260 376 MobiDBLite consensus disorder prediction 56 77 - -
Amo12g3260 376 Pfam Myb-like DNA-binding domain 156 204 IPR001005 -
Amo12g3260 376 Pfam Myb-like DNA-binding domain 303 346 IPR001005 -
Amo12g3260 376 MobiDBLite consensus disorder prediction 100 133 - -
Amo12g3260 376 ProSiteProfiles SANT domain profile. 300 352 IPR017884 -
Amo12g3260 376 CDD SANT 305 343 IPR001005 -
Amo12g3260 376 Gene3D - 305 367 - -
Amo12g3260 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 297 352 IPR017930 -
Amo12g3260 376 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 351 IPR006447 GO:0003677
Amo12g3260 376 CDD SANT 158 205 IPR001005 -
Amo12g3260 376 SUPERFAMILY Homeodomain-like 154 213 IPR009057 -
Amo12g3260 376 MobiDBLite consensus disorder prediction 47 152 - -
Amo12g3260 376 Gene3D - 151 216 - -
Amo12g3260 376 Coils Coil 373 376 - -
Amo12g3260 376 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 143 371 IPR043363 -
Amo12g3260 376 SUPERFAMILY Homeodomain-like 298 353 IPR009057 -
Amo12g3260 376 ProSiteProfiles Myb-like domain profile. 158 205 IPR001005 -
Amo12g3260 376 SMART sant 154 207 IPR001005 -
Amo12g3260 376 SMART sant 301 350 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3260 Amo-Chr12 121534210 121536672 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo12g3260 Myb_DNA-binding 2.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3260 - - aip:110269155 259.996