Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3216 ATGATTTCGTACTATGAACTATCACAGGCAACTAATGGATTTGATGAGAGTAATTTGCTTGGTAGGGGCAGTTTTGGCTGTGTTCAAAGGTTGACTTTCAAATGGGATGGTGGTTGCTGTCAAAGTTGTAGAATGCTAGCAATGCGCAATCTGCGCCATCGAAATCTCATGAAGATCATAGGTTGTTGTTCAAGTATAGATTACAAGCTTTTAGTGATGGAGTTCATGCCTAATGGGAGCCTTGAGAGATGGTTGTATTCTCATAACCATTGTTTGGACTTCTTGCAAAGGCTAAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTGCATCATGGATCTTCACCTATAGTGGTTCATTGTGATGTCAAACCTTGTAATGTCTTATTGGATGAAGACATGGTTGGCCATGTCAGTGACTTTGGCATTGCCAAATTGCTTGGCGAGGGACAATCCAAAGAATATACCAAGACCATGGCTACAGTTGGRTACATTGCACCGGGTAATTTTGGGATAATGCTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGACTTGTTTGTTGCAGGATTAAGCATGAAAGGTTGGATTAGTGAATCATTGTCACGTGCAATTGATCGAGTTGTGGATTCCAACTTGTTACAAGATGAAGGTCACCACCATGTTGATGACATAATAGCATCTACATCATCTATCTTGAAACTGGCCTTGAATTGTTGTGAGGATTTACCTGAAGAATGA 747 0.4016 MISYYELSQATNGFDESNLLGRGSFGCVQRLTFKWDGGCCQSCRMLAMRNLRHRNLMKIIGCCSSIDYKLLVMEFMPNGSLERWLYSHNHCLDFLQRLNIMIDVASALEYLHHGSSPIVVHCDVKPCNVLLDEDMVGHVSDFGIAKLLGEGQSKEYTKTMATVGYIAPGNFGIMLMETFTRKKPTDDLFVAGLSMKGWISESLSRAIDRVVDSNLLQDEGHHHVDDIIASTSSILKLALNCCEDLPEE* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3216 248 Gene3D Phosphorylase Kinase; domain 1 45 79 - -
Amo12g3216 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Amo12g3216 248 Pfam Protein kinase domain 47 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3216 248 ProSiteProfiles Protein kinase domain profile. 14 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3216 248 PANTHER RECEPTOR-LIKE PROTEIN 55 2 248 - -
Amo12g3216 248 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 2 248 - -
Amo12g3216 248 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
Amo12g3216 248 SMART serkin_6 14 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3216 248 SUPERFAMILY Protein kinase-like (PK-like) 2 190 IPR011009 -
Amo12g3216 248 Gene3D Transferase(Phosphotransferase) domain 1 80 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3216 Amo-Chr12 120959832 120960979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3216 2 246 Receptor kinase-like Gene Family AT3G47570 37.415 1.69e-50 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo12g3216 Pkinase 1.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3216 - K13420 aip:107647131 424.476