Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3215 ATGGATACTGGCATAAAGCACGCTATCGTTGTCAAGGTTATGGGTCGCACTGGTTCTAGAGGGCAAGTGACCCAGGTTAGAGTCAAGTTTCTGGATGATCAGAATCGCCACATCATGAGGAATGTGAAGGGACCAGTGAGAGAAGGTGACATTCTCACTCTACTTGAGTCTGAGAGAGAAGCAAGAAGATTGCGCTAG 198 0.4747 MDTGIKHAIVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3215 65 Pfam Ribosomal protein S28e 5 64 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo12g3215 65 Hamap 30S ribosomal protein S28e [rps28e]. 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo12g3215 65 Gene3D - 1 65 IPR012340 -
Amo12g3215 65 ProSitePatterns Ribosomal protein S28e signature. 56 64 IPR028626 -
Amo12g3215 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 - -
Amo12g3215 65 PANTHER 40S RIBOSOMAL PROTEIN S28 1 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
Amo12g3215 65 SUPERFAMILY Nucleic acid-binding proteins 3 65 IPR012340 -
Amo12g3215 65 CDD S1_S28E 6 65 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3215 Amo-Chr12 120956178 120957815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3215 1 65 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 4.14e-35 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3215 K02979 - vvi:100246987 98.9821