Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3171 ATGAGAGGAAGAAGCTACAGCTACAGTCCATCGCCTCCAAGACGTTACAGCCATAGAAGGCGCAGTCCTAGCCCTAGGGGTCACTATAGAGGCCGTGGTAGGGATTTGCCAACAAGCCTTCTCGTTCGGAACCTTCACAAAGATTGCAGGCCAGAAGATTTACGTGGCCCATTTGGCCAATTTGGTCCACTGAAGGACGTTTATCTGCCTCGAGATTATTATACTGGGGAGCCGCGTGGATTTGGGTTTGTTCAGTATGTGGATCCAGCTGATGCTGCTGATGCAAAGTATCACATGGATGGTCAAATTCTACTTGGTCGGGAACTAACTGTGGTATTTGCCGAGGAAAACAGAAAAAAACCCCAGGAAATGAGAGCCAGAGAACGTCGGAGGTAA 396 0.4899 MRGRSYSYSPSPPRRYSHRRRSPSPRGHYRGRGRDLPTSLLVRNLHKDCRPEDLRGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERRR* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3171 131 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 129 - -
Amo12g3171 131 SUPERFAMILY RNA-binding domain, RBD 38 129 IPR035979 GO:0003676
Amo12g3171 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Amo12g3171 131 MobiDBLite consensus disorder prediction 1 37 - -
Amo12g3171 131 SMART rrm1_1 39 112 IPR000504 GO:0003723
Amo12g3171 131 Gene3D - 32 131 IPR012677 -
Amo12g3171 131 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 129 - -
Amo12g3171 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3171 Amo-Chr12 120450637 120452823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3171 38 125 Eukaryotic Initiation Factors Gene Family AT1G71770 33.708 5.89e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3171 K12900 - cit:102626112 209.534