Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3166 ATGCCACAAATAATCTCCAAAGTAGTCAACCACACAGTCCATGAAGTCAAATCTTCATCCAACAACTGCACCACCATAATCAAGAATCTCCAAAACACTCTCAACACAATTGAGAAAAGAGCCTTAGATGATTGTCTCAAACTCTTTGATGACACCATAGTAGAACTCAACACCACCATTCTTGATCTCTCAAAAAATCCATCATCATCATCATCATCATCTTCCAACCAAGATTTGCAAACTCTACTAAGTGGGGCAATGACAAATTTGTACACTTGTCTTGATGGTTTCTCACAAAGCAAAAATGGGAATGCTGTGAGAGGGTTGATAGAGGAGAAAGTGATTGAGATATCACATCATGTTAGTAACTCATTGGCAATGTTGAAGAAAGTGAAGACAAGTTTGAAGAAAGAAGAAGTGTCTGCTGAATATGGAACAATGAAGAAAGGGTTCCCTTCATGGGTTTCTGCTAAGGATAGGAAGCTTCTAGAAGGTGGAAATGTGAATGAAACTAAGATTGATGTTGTTGTGGCTAAAGATGGTTCTGGAAATTTTACTACTATTGGTGAAGCTGTAGCTGTGGCTCCTAATTCCACCACAACCAGCAAAATCTCATATGAATGA 624 0.3846 MPQIISKVVNHTVHEVKSSSNNCTTIIKNLQNTLNTIEKRALDDCLKLFDDTIVELNTTILDLSKNPSSSSSSSSNQDLQTLLSGAMTNLYTCLDGFSQSKNGNAVRGLIEEKVIEISHHVSNSLAMLKKVKTSLKKEEVSAEYGTMKKGFPSWVSAKDRKLLEGGNVNETKIDVVVAKDGSGNFTTIGEAVAVAPNSTTTSKISYE* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3166 207 PANTHER PECTINESTERASE 2 204 - -
Amo12g3166 207 SUPERFAMILY Pectin lyase-like 172 199 IPR011050 -
Amo12g3166 207 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 7 130 IPR035513 -
Amo12g3166 207 SMART PMEI_2 4 127 IPR006501 GO:0004857
Amo12g3166 207 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 130 IPR006501 GO:0004857
Amo12g3166 207 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 133 IPR035513 -
Amo12g3166 207 PANTHER PECTINESTERASE 2 204 - -
Amo12g3166 207 CDD PMEI-like_3 3 130 - -
Amo12g3166 207 Pfam Plant invertase/pectin methylesterase inhibitor 8 127 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3166 Amo-Chr12 120419353 120420060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3166 3 206 Carbohydrate Esterase AT4G02320 39.171 2.31e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3166 K01051 - adu:110278297 367.851