Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3159 ATGGCTGTTATAGATGCATTCAGAATGTTGCTATGTTACGAATATGAAGTGCTTAGGGCAAAAATTGTGGTAGTAGGAGAAACAAAGTTGAAAATCAAATCATATGCTTTGGGTGCAAATTTCATTCCATTCCCTAGCTGCATAGTTGCAACACTTAAACCAGGAGCCAAACACCCTACACAACCACACATTCACACCCTTAACCAAAGCTTCTACTACACCACTTCTATTTTTCCTCTTAAGCCCTTTACAATGAACAACCTCAAAAAATCACCATGTTTTCCCTTTATACCAATCCTATCCATGATTTTTGCACTGATCTTTTTAGCTACACATCTCAATTATTTCATTCAAACACCAAATTTCAAATCAACAACACCACAAGAAGGGAAAAAACATCTCCATTTCCAAAACCATATCCAATTAGTAGCACATTCAAAATGCAAAGGAACACTCTACCCTGATCTCTGTGTCTCAACCTTATCCACATTCCCAAACCTTGAAACAAAAACAATGCCYCAAATAATCTCCAAAGTAGTCAACCACACAGTCCATGAAGTCAAATCTTCATCCAACAACTGCACCACCATAATCAAGAATCTCCAAAACACTCTCAACACCATTGAGAAAAGAGCCTTAGATGATTGTCTCAAACTCTTTGATGACACCATAGTAGAACTCAACACCACCATTCTTGATCTCTCAAAAAACCCATCATCATCATCATCTTCCAACCAAGATTTGCAAACTCTACTSAGTGGGGCAATGACAAATTTGTACACTTGTCTTGATGGTTTCTCACAAAGCAAAAATGGGAATGCTGTGAGAGGGTTGATAGAGGAGAAAGTGATTGAGATATCACATCATGTTAGTAACTCATTGGCAATGTTGAAGAAAGTGAAGACAAGTTTGAAGAAAGAAGAGGTGTTTGCTGAATATGGAACAATGAAGAAAGGGTTCCCTTCATGGGTTTCTGCTAAGGATAGGAAGCTTCTAGAAGGTGGAAATGTGAATGAAACTAAGATTGATGTTGTTGTGGCTAAAGATGGTTCTGGAAAGTTTACTACTATTGGTGAAGCTGTAGTTATGGCTCCTATTCTCCTAATTCCAGCACAACCAGAATACGATGATCAACTCGGTTGTTTACGTGAAATCTTTTCAAGATTCGACATGGACAACGACGGTAGCTTAACGATTCTAGAACTCGCCGCGCTCTTGCGTTTTCTAGGGATCAATCCCATGGGGAACCAGATCCACTTGTTGTGGACGATTATGGACGTTAACCGCAATGGCTACGTCGAATTGGAAGCGGCGGTAGAGTCGGTGTCGAGGCCGAAGACCATGCCGGACTTGACGTACTCGACGGCTTTGTCAACGGCGAGTTTCTTGAGTGGAGCATACTTGGAGAATGTGGAAGTAATTAGAAAGAAGACTAATTTGATGTTTATTGGAGATGGCATTGTTAGGACCATTGTCAAGGCAAGTAGGAATGTTGTCGATGGCTGGACCACTTTTCAATCAGGTACTGTTGGTAACCATTTTTCTTCTTTAATTTCTTCTACTTATTAA 1569 0.399 MAVIDAFRMLLCYEYEVLRAKIVVVGETKLKIKSYALGANFIPFPSCIVATLKPGAKHPTQPHIHTLNQSFYYTTSIFPLKPFTMNNLKKSPCFPFIPILSMIFALIFLATHLNYFIQTPNFKSTTPQEGKKHLHFQNHIQLVAHSKCKGTLYPDLCVSTLSTFPNLETKTMPQIISKVVNHTVHEVKSSSNNCTTIIKNLQNTLNTIEKRALDDCLKLFDDTIVELNTTILDLSKNPSSSSSSNQDLQTLLSGAMTNLYTCLDGFSQSKNGNAVRGLIEEKVIEISHHVSNSLAMLKKVKTSLKKEEVFAEYGTMKKGFPSWVSAKDRKLLEGGNVNETKIDVVVAKDGSGKFTTIGEAVVMAPILLIPAQPEYDDQLGCLREIFSRFDMDNDGSLTILELAALLRFLGINPMGNQIHLLWTIMDVNRNGYVELEAAVESVSRPKTMPDLTYSTALSTASFLSGAYLENVEVIRKKTNLMFIGDGIVRTIVKASRNVVDGWTTFQSGTVGNHFSSLISSTY* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3159 522 Pfam Pectinesterase 464 513 IPR000070 GO:0030599|GO:0042545
Amo12g3159 522 Gene3D - 432 518 IPR012334 -
Amo12g3159 522 PANTHER PECTINESTERASE 122 365 - -
Amo12g3159 522 PANTHER PECTINESTERASE 464 511 - -
Amo12g3159 522 CDD PMEI-like_3 148 299 - -
Amo12g3159 522 Pfam EF-hand domain 382 410 IPR002048 GO:0005509
Amo12g3159 522 PANTHER PECTINESTERASE 464 511 - -
Amo12g3159 522 PANTHER PECTINESTERASE 122 365 - -
Amo12g3159 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 146 299 IPR035513 -
Amo12g3159 522 SMART PMEI_2 139 296 IPR006501 GO:0004857
Amo12g3159 522 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Amo12g3159 522 TIGRFAM PME_inhib: pectinesterase inhibitor domain 143 299 IPR006501 GO:0004857
Amo12g3159 522 Gene3D - 375 431 - -
Amo12g3159 522 Pfam Plant invertase/pectin methylesterase inhibitor 146 296 IPR006501 GO:0004857
Amo12g3159 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 143 301 IPR035513 -
Amo12g3159 522 SUPERFAMILY EF-hand 366 436 IPR011992 -
Amo12g3159 522 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Amo12g3159 522 CDD EFh 382 436 IPR002048 GO:0005509
Amo12g3159 522 SUPERFAMILY Pectin lyase-like 464 510 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3159 Amo-Chr12 120298415 120302439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3159 465 519 Carbohydrate Esterase AT4G02320 56.364 6.75e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3159 K01051 - adu:110278297 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3159 12 120298415 120302439 Amo12g3159 12 120298415 120302439 ECH