Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3145 ATGAACAACCTCAGAAAACAATCACCATGTTTCCCCTTTATACCAATCCTATCCATGATTTTTGCACTGATCTTTTTAGCAACACATCTCAATTATTTCATTGAAGCCCCAAATTTCAAATCAACAACACCACAAGAAGGGAAAAAACATCTCCATTTCCAAAACCATATCCAATTAGTAGCACATTCAAAATGCAAAGGAACACTCTACCCTGATCTCTGTGTCTCAACCTTATCCACATTCCCAAACCTTGAAACAAAAACAATGCCGCAAATAATCTCCAAAGTAGTCAACCACACAGTCCATGAAGTCAAATCTTCATCCAACAACTGCACCACCATAATCAAGAATCTCCAAAACACTCTCAACACCATTGAGAAAAGAGCCTTAGATGATTGTCTCAAACTCTTTGATGACACCATAGTAGAACTCAACACCACCATTCTTGATCTCTCAAAAAACCCATCATCATCATCATCTTCCAACCAAGATTTGCAAACTCTACTTAGTGGGGCAATGACAAATTTGTACACTTGTCTTGATGGTTTCTCACAAAGCAAAAATGGGAATGCTGTGAGAGGGTTGATAGAGGAGAAAGTGATTGAGATATCACATCATGTTAGTAACTCATTGGCAATGTTGAAGAAAGTGAAGACAAGTTTGAAGAAAGAAGAAGTGTTTGCTGAATATGGAACAATGAAGAAAGGGTTCCCTTCATGGGTTTCTGCTAAGGATAGGAAGCTTCTAGAAGGTGGAAATGTGAATGAAACTAAGATTGATGTTGTTGTGGCTAAAGATGGTTCTGGAAATTTTACTACTATTGGTGAAGCTGTAGCTATGGCTCCTAATTCCAGCACAACCAGGTTTGTGATATACATAAAAAGTGGAGCATACTTCGAGAATGTGGAAGTAATTAGAAAGAAGACCAATTTGATGTTTATTGGAGATGGCATTGGAAGGACCATTCTCAAGGCAAGTAGGAATGTTGTCGATGGCTGGACCACTTTTCAATCAGCTACTGTTGCTGTGGTAGGACAAGGCTTCGTAGCTAAGGGCATAACCTTTGAGAACTCAGCCGGGCCAGACAAGCACCAAGCCGTGGCTCTACGAAGCGGCGCCGACTTCTCCGCCTTCTACAAATGCAGCTTCGTCGGCTACCAAGACACCCTCTACGTCCACTCCATGCGCCAATTCTACCGCGACTGCGACATTTACGGCACCGTTGACTTCATATTCGGAACGCCGCCGTACTCTTCCAAAATTGCAACCTCTACGCCGAAACCTAACGAGAATCAGAAGAATCTGTTCACCGCACAAGGCAGAGAAGATCCGAACCAGAACACCGGAATTTCGATCTTGAATTGCAAGATCGCCGCCGCATCGGACCTAATTCCGGTCAAATCGTCGTTCAAGAGTTACTTAGGGAGGCCATGGAAACTATACTCGAGAACGGTGTACCTTAGATCTTACATGGAGGATCTGATTGATCCGAAAGGGTGGCTTGAATGGAATGAGACATTTGCATTGGACACACTTTATTATGGTGAGTATATGAATAAGGGGCCAGGTTCAAACACAAGCGGTAGAGTTAATTGGCCAGGTTTTAGGGTTATTAATAGTTCCAATGAAGCAAGCCAATTCACTGTTGGTGAGTTCATACAGGGTAGTGAGTGGTTGAACAACACTGGCATTCCATTCTTCTATAATTTTAGTTGA 1716 0.4219 MNNLRKQSPCFPFIPILSMIFALIFLATHLNYFIEAPNFKSTTPQEGKKHLHFQNHIQLVAHSKCKGTLYPDLCVSTLSTFPNLETKTMPQIISKVVNHTVHEVKSSSNNCTTIIKNLQNTLNTIEKRALDDCLKLFDDTIVELNTTILDLSKNPSSSSSSNQDLQTLLSGAMTNLYTCLDGFSQSKNGNAVRGLIEEKVIEISHHVSNSLAMLKKVKTSLKKEEVFAEYGTMKKGFPSWVSAKDRKLLEGGNVNETKIDVVVAKDGSGNFTTIGEAVAMAPNSSTTRFVIYIKSGAYFENVEVIRKKTNLMFIGDGIGRTILKASRNVVDGWTTFQSATVAVVGQGFVAKGITFENSAGPDKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSMRQFYRDCDIYGTVDFIFGTPPYSSKIATSTPKPNENQKNLFTAQGREDPNQNTGISILNCKIAAASDLIPVKSSFKSYLGRPWKLYSRTVYLRSYMEDLIDPKGWLEWNETFALDTLYYGEYMNKGPGSNTSGRVNWPGFRVINSSNEASQFTVGEFIQGSEWLNNTGIPFFYNFS* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3145 571 CDD PMEI-like_3 65 216 - -
Amo12g3145 571 Pfam Plant invertase/pectin methylesterase inhibitor 63 213 IPR006501 GO:0004857
Amo12g3145 571 PANTHER PECTINESTERASE 43 570 - -
Amo12g3145 571 SMART PMEI_2 56 213 IPR006501 GO:0004857
Amo12g3145 571 Gene3D - 254 570 IPR012334 -
Amo12g3145 571 TIGRFAM PME_inhib: pectinesterase inhibitor domain 60 216 IPR006501 GO:0004857
Amo12g3145 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Amo12g3145 571 Pfam Pectinesterase 260 555 IPR000070 GO:0030599|GO:0042545
Amo12g3145 571 PANTHER PECTINESTERASE 43 570 - -
Amo12g3145 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 218 IPR035513 -
Amo12g3145 571 SUPERFAMILY Pectin lyase-like 258 568 IPR011050 -
Amo12g3145 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 216 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3145 Amo-Chr12 120055880 120062826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3145 89 566 Carbohydrate Esterase AT4G02320 53.252 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3145 K01051 - gmx:100802881 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0908 16 14443122 14445719 Amo12g3145 12 120055880 120062826 PCT
Amo12g3145 12 120055880 120062826 Amo16g0502 16 8305308 8309466 PCT