Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3143 ATGAGAACTTCTTGGGCAGATTCTGCTGACAATTCAGCCACTCGTTCTTCCAATACCCATGCGCAGTCTAACCGGGCTGCATATGTTCCGCCTCATCTTCGCAACCGGCAAATGACTTCTGAGCCTCCTGTACCATCGAATTCAGCAGCTGCTTTGCCAGCTAATGATCGGTCGAGTTATGGTGGTCCAACTGCTTCTTCTTATGGGGGAAGTTCCTTTAATAAGCCTGATTTCGGGCGGCAAGGATATGGCTCTGGTTTTCAGACCGGTGGTGGTGGTGGTGGTGCCTGGAACAACAATAGAGGAGGAGGGAGGGACCGTGGAAGGCGCGAGGCGAACCCTTTTGAGAATGACGACGCTGCGGATCAGTCAATTGGTGAGCAGGAAAACACAGGGATTAACTTTGATGCCTATGATGATATCCCTGTGGAGACTAGCGGAGAAAATGTGCCTCCACCTGTGAATACATTTGCAGAGATTGACTTGGGAGAGACATTGAATCAGAATATAAAGCGCTGCAAGTATGTGAAGCCAACTCCGGTACAGAGGTATGCCATACCGATATCTCTTGCTGGACGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGAAAAACTGCTGCCTTTTGCTTCCCTATTATAAGTGGAATAATGAGGGAGCCATTTGTTCAAAGACCCCGTGTAGGACGAACTGCTTACCCACTGGCACTTATCCTCTCCCCTACTAGGGAGCTTTCGTGCCAGATACATGATGAGGCCAAAAAATTTTCTTACCAGACTGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTTGCAACTCCAGGGCGATTGGTAGATTTGCTTGAGAGGGCTAGGGTATCGCTGCAGATGATAAGATATTTGGCTCTCGATGAGGCAGATCGTATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATTGTTGAACAAATGGACATGCCCCCACCTGGCATGAGGCAGACACTGCTCTTCAGTGCGACATTTCCAAAAGAGATACAGCGACTTGCATCGGATTTTCTTTCAAGCTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGACTTAATCGCTCAGAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAACTGGTATTGATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCACTTGAACACTGCTTGTGTGTCAATGGATTTCCTGCAACTAGCATTCATGGTGATAGAACACAACAAGAAAGAGAACTAGCATTGAGATCATTCAAGAGCGGAAACACACCAATTTTAGTGGCAACGGATGTTGCAGCTCGTGGTCTTGATATTCCAAGGGTGGCACATGTGGTAAACTTTGATCTTCCCAATGACATCGATGATTATGTGCATCGGATAGGAAGAACCGGTCGAGCTGGTAAAATGGGGTTGGCCACAGCCTTCTTCAATGAGAGTAATTTGTCCCTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCGAATCAAGAAGTACCTGCTTGGCTCACACGTTATGCAGCAAGGCTTCTTACGGCGGTGGCAACAGAAACAGGCGCACAGGTGGATCCCGTTTGGCGGCCGCGATTTCAGGAGGGAGGGCTCGTTAACAAAGGAACAGATTACTATGGAGGAGGAGGAACTGGTGGGCATGGGGTTCCGGGCAGTTATGGCGGAGGATATGGTCAAGGCGTGACAAGTGCTTGGGATTAA 1836 0.482 MRTSWADSADNSATRSSNTHAQSNRAAYVPPHLRNRQMTSEPPVPSNSAAALPANDRSSYGGPTASSYGGSSFNKPDFGRQGYGSGFQTGGGGGGAWNNNRGGGRDRGRREANPFENDDAADQSIGEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGETLNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREPFVQRPRVGRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGIDGKQGLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARLLTAVATETGAQVDPVWRPRFQEGGLVNKGTDYYGGGGTGGHGVPGSYGGGYGQGVTSAWD* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3143 611 Gene3D - 373 550 IPR027417 -
Amo12g3143 611 SMART ultradead3 174 385 IPR014001 -
Amo12g3143 611 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 37 551 - -
Amo12g3143 611 MobiDBLite consensus disorder prediction 1 25 - -
Amo12g3143 611 CDD SF2_C_DEAD 382 518 - -
Amo12g3143 611 MobiDBLite consensus disorder prediction 39 74 - -
Amo12g3143 611 Pfam DEAD/DEAH box helicase 179 359 IPR011545 GO:0003676|GO:0005524
Amo12g3143 611 CDD DEADc_DDX3_DDX4 156 376 IPR044763 GO:0003724|GO:0005524
Amo12g3143 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 548 IPR001650 -
Amo12g3143 611 Pfam Helicase conserved C-terminal domain 395 509 IPR001650 -
Amo12g3143 611 MobiDBLite consensus disorder prediction 103 117 - -
Amo12g3143 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 155 183 IPR014014 GO:0003724
Amo12g3143 611 MobiDBLite consensus disorder prediction 1 128 - -
Amo12g3143 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 370 IPR014001 -
Amo12g3143 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 524 IPR027417 -
Amo12g3143 611 Gene3D - 111 372 IPR027417 -
Amo12g3143 611 SMART helicmild6 428 509 IPR001650 -
Amo12g3143 611 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3143 Amo-Chr12 120018673 120022990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3143 153 541 Eukaryotic Initiation Factors Gene Family AT3G19760 31.633 6.48e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3143 K11594 - gmx:100818326 924.08