Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3134 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCTTGAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTTAGAATGACCTTTACCACCCTTAAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACCAATCCAACAGCCGGTCTAAACTGTCCTGCAAGAATTTATATACACACATTGATGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGYTGTCCAAGTAAAKCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCACCGTCACATATGGGTTCCTATCTATCTGGATCACCACTTTTGGGCAGGGATGAGAAATACACAAAGGAGCGAGAGAATGCATTCATTTTTTAACAAGTATATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGAAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAAAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCMCCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCATGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTTTGCACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCTTTCAAAGCCAAAAGGAAGGGGACATCTTCTTTATCTCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATCGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCGAGGGTTTTAGTGTCAAAGCATCAGGGGGGGATAGATTTCAGGGTGTATGTTCAACTTTATTTGGGTGTAAAAATTCGCAGGTTATGGGTGTATATTTGATTTGA 1488 0.4368 MDHSTSDCQLNPGEVDYEFESNEVLEPLSVVDDELVPKVRMTFTTLKDAGKFYRNYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLMDVGAWIISKVVLDHSHPCCPSKXEMLKQHRELSMSIRHRHIWVPIYLDHHFWAGMRNTQRSERMHSFFNKYITRNSSLIQFVKQYDNCLESREQAERESDAADFHTVIPCATKSSIEAQFQDAYTHQKFREVQAQFKGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIMSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMESFKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEGFSVKASGGDRFQGVCSTLFGCKNSQVMGVYLI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3134 495 ProSiteProfiles Zinc finger SWIM-type profile. 287 323 IPR007527 GO:0008270
Amo12g3134 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 154 394 IPR031052 GO:0006355
Amo12g3134 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 144 IPR031052 GO:0006355
Amo12g3134 495 Pfam FAR1 DNA-binding domain 51 136 IPR004330 -
Amo12g3134 495 Pfam SWIM zinc finger 289 320 IPR007527 GO:0008270
Amo12g3134 495 PANTHER OS03G0843700 PROTEIN 154 394 - -
Amo12g3134 495 SMART 26again6 298 325 IPR006564 GO:0008270
Amo12g3134 495 PANTHER OS03G0843700 PROTEIN 26 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3134 Amo-Chr12 119911745 119915062 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g3134 FAR1 1.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3134 - - adu:110280503 580.867