Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3086 ATGGTTGAAACTAGACGCAGTTCTTCCCAATCCTCAACCAAACGCACCCTCTCTTCGCCTTCTCCTTCTAACCCCAACAAAAGATCAAAGGTTTCTACCAACACCACAGAGGATGCATCGTCCACGACGCTTCCTGTTGCTGCTGCTCCTCCTGTGAACGAATCTGGACCCGGGAATGATGATCTACCCGAGACGGCGTCGTTGAAGGCCGTTGATGCTTGCAGCGATGATGTTTTGCCAGAAACTTTGTCGTTGAAGGCCACGCCTCCTTCTGTGCCGGCGGCAGAAGGGGATGATTTGGTGACGCCTCAGTCCATAGGTGAGGATGCGGTGGATGGAGAGAAATCGAGTGCTGCGGCGGCTTTGGCGGCGGCTGCTGCTGCCGGCCGAATGAAGAAGCGGTCAGTGAAATCGAAATCAGGACCTAAGACAGCATGGGGGAAGCTCCTTTCTCAGTGTTCTCAGATTCCTCACCAGCCTATGTGTGATCCTATCTTCACCATTGGCCAAGGTCGTCAGTGCAATTTATGGCTTAAAGATCCAACTGTTGGCAATATTTTGTGCAAGTTGAGCAACATCGAGCGTGGAGGTTCACCTGTTGCATTACTGGAAATCACAGGAGGCAAAGGTGCTGTTCAAGTTAATGGTAAGACCTATCGCAAGAATGCACGCCTTATATTAAGTGGAGGTGATGAGGTGGTCTTCGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCACAAATAATAATGTTGCTACCACTGGCATACCTTCTCCTGTGAGTATTTTAGAAGCTCGGAGTACTCCAGTGAATGGAATGCAAGTTGAAGCTAGATCAGGGGACCCTTCCGCTGTTGCTGGAGCATCAATATTAGCCTCATTATCTAATCTTCATAAAGATTTAGCTCGCCTTCCGCCTGCTGCTAAAGCTGGCAAGAATGTCCAACAAAACACGGATGCTTCATCACTACCTTCTGGCAATGGGGATGGTGTTCGAGACAATGAAGTGAAGGATATCACCAATACCGACGAGCAAACTGGAGCTGTTTCTGCTGAGAAAACTGTTCTTGCATCTTCTGCTATTGGTAATGAAAATCCTAGTGTTGACACCATGGAGGTTGATGCCAATGTGGATACAGATGCTGGGAAGATGGCTGCTGCTGCTACCTGTGAATTAAGGCCGTTGCTGCGCATGCTTGCTGGTTCATATCCTGATTTTGATTTAAGTAGTAGCATTACAAAGATATTGGAGGAGCGAAGGGAATTAAGAGAACTTCTTAAAGATGTTGATACCCCAGCAATATTGGCATCAACCAGGCGGCAAGCTTTTAAGGAGAGTTTACAACAAAGAGTTCTTAGTGCTGACAATATTGATGTCTCATTTGAAAGTTTCCCATACTATCTAAGCGACACGACAAAGACCGTTTTGATTGCTTCGACATATATTCATTTGAAGTGTAATGGCTTTGGAAAATTTGCCTCAGACCTCCCCTCAGTGTCCCCACGGATATTGTTATCTGGACCTGCAGGTTCGGATATATATCAGGAGACTCTTGCCAAGGCACTTGCAAAGCATTTTGGTGCGAGGCTACTAATTGTTGATTCTCTTTCACTACCTGGTGGAACTCCATCAAAGGAAGTTGATTCTGCTAAAGAAAGTTCAAAGCCTGAACGACCATCTGTGTTGGCCAAGAGAAGTACACATGCTGCTTCTTTAAAACATAGTAAACCAGCTTCTAGTGTTGATGCTGAAATTGTGGGTGGATCCACAATAAGTTCTCAGGCTATGCTGAAGCAGGAGGTTTCTACTGCTTCATCAAAAGGCACTACTATTAAAACAGGTGATCGAGTAAAATTTGTTGGTAACTTCCCTTCTGCTGTCTCGTCAATACAAAATTATTCAAGGGGACCAAGCTATGGCTCCCGCGGAAAGGTTATGCTTGCATTTGAAGATAATGGGTCTTCGAAGATTGGGGTTAGGTTTGATAAATCAATTCCTGATGGCAATGATCTTGGTGGTCTTTGTGAAGATGATCGCGGGTTCTTTTGTTCTGCAAATCATTTGTTGAGAGTAGATGGTTCAGGGGGCGATGACGTTGACAAGATTGCAGTTCAAGAAATCTTTGAGGTTGTTACCAGTCAGAGTCAAAACGGAGCAGTGGTGTTATTCATTAAAGACATAGAGAAGGCAATGGTTGGGTACACCGAGATGTTGAAAATTAAATTTGAAAGCTTGCCACAGAATGTGGTGGTAATTGCCTCTCATACCCAGCTGGACAATCGAAAGGAGAAGACACAACCTGGTGGCCTTCTATTTACGAAGTTTGGGAGCAATCAGACTGCACTACTAGATCTTGCTTTTCCGGATAATTTTGGTAGACTGCATGATAGGAGCAAAGAAACACCCAAAGTAATGAAGCAACTTGGTCGCCTCTTCCCAAACAGAGTGACTATACAGCTGCCTCAGGATGAGACCTTGCTTTCTGATTGGAAGCAGCAGCTAGAGCGTGATGTTGAGACTATGAAAGCTCAGTCTAATGTTGTCAGCATTCGAACGGTTCTCAGCAGAGTTGGATTGGAATGTCCTGACTTGGAGACTGTTTGCATCAAAGATCAAGCCCTAACAACCGAAAGTGTGGAAAAGATCATTGGTTGGGCAATAAGTTACCAGCTTATGCACTCATCTGAATCCTTATCCAAAGATTCTAAGCTTGTGCTGTCTGCAGAAAGCATTAATTATGGGCTGAACATTCTGCATGGCATTCAAAATGAAAACAAGAGCTTAAAGAAATCATTGAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAATTGCTTGGTGATGTTATTCCACCAACCGATATTGGGGTGACATTCGATGATATTGGAGCTTTGGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCGGAATTGTTTTGCAAAGGGCAGCTGACTAAGCCTTGCAAAGGAATATTGCTTTTTGGCCCCCCTGGCACAGGAAAAACTATGCTTGCAAAAGCTGTAGCAACCGAAGCTGGAGCGAATTTTATCAACATTTCAATGTCCAGCATTACTTCGAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCACTGGCCAGCAAGATTGCTCCAAGTGTTATTTTCGTCGATGAGGTTGATAGTATGTTGGGAAGACGTGAAAATCCAGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACAAAGGATAAAGAACGCATACTTGTTCTCGCTGCTACGAATAGGCCATTTGATCTTGATGAAGCTGTTATTAGGAGGCTTCCACGAAGATTGATGGTTAATTTGCCAGATGCTCCAAATAGAGAAAAAATTCTCAAAGTCATTTTAGCAAAGGAAGATTTAGCAATGGACGTTGATTTGGATGCGTTGGCAAATATGACTGATGGATATTCAGGGAGCGATCTAAAGAATCTTTGCGTCACAGCGGCTCACTGCCCGATAAGAGAGATCTTGGAGAAGGAGAAGAAGGAGAGAAGTTTAGCACAAGCTGAGAACAAACCTTTGCCGAGATTGTGTAGCAGTGCCGATATTCGACCCTTAAAGATGGAAGATTTTAAATATGCGCATGAGCAGGTGTGCGCGAGTGTGTCATCGGAATCAAACAATATGAATGAGCTCCTCCAATGGAATGACCTTTACGGAGAAGGCGGCTCGAGAAAAATGAGATCATTGAGCTATTTCATGTGA 3795 0.4424 MVETRRSSSQSSTKRTLSSPSPSNPNKRSKVSTNTTEDASSTTLPVAAAPPVNESGPGNDDLPETASLKAVDACSDDVLPETLSLKATPPSVPAAEGDDLVTPQSIGEDAVDGEKSSAAAALAAAAAAGRMKKRSVKSKSGPKTAWGKLLSQCSQIPHQPMCDPIFTIGQGRQCNLWLKDPTVGNILCKLSNIERGGSPVALLEITGGKGAVQVNGKTYRKNARLILSGGDEVVFGSSGKHAYIFQQLTNNNVATTGIPSPVSILEARSTPVNGMQVEARSGDPSAVAGASILASLSNLHKDLARLPPAAKAGKNVQQNTDASSLPSGNGDGVRDNEVKDITNTDEQTGAVSAEKTVLASSAIGNENPSVDTMEVDANVDTDAGKMAAAATCELRPLLRMLAGSYPDFDLSSSITKILEERRELRELLKDVDTPAILASTRRQAFKESLQQRVLSADNIDVSFESFPYYLSDTTKTVLIASTYIHLKCNGFGKFASDLPSVSPRILLSGPAGSDIYQETLAKALAKHFGARLLIVDSLSLPGGTPSKEVDSAKESSKPERPSVLAKRSTHAASLKHSKPASSVDAEIVGGSTISSQAMLKQEVSTASSKGTTIKTGDRVKFVGNFPSAVSSIQNYSRGPSYGSRGKVMLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDVDKIAVQEIFEVVTSQSQNGAVVLFIKDIEKAMVGYTEMLKIKFESLPQNVVVIASHTQLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFGRLHDRSKETPKVMKQLGRLFPNRVTIQLPQDETLLSDWKQQLERDVETMKAQSNVVSIRTVLSRVGLECPDLETVCIKDQALTTESVEKIIGWAISYQLMHSSESLSKDSKLVLSAESINYGLNILHGIQNENKSLKKSLKDVVTENEFEKKLLGDVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILKVILAKEDLAMDVDLDALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLAQAENKPLPRLCSSADIRPLKMEDFKYAHEQVCASVSSESNNMNELLQWNDLYGEGGSRKMRSLSYFM* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3086 1264 CDD FHA 163 246 IPR000253 GO:0005515
Amo12g3086 1264 Gene3D - 1132 1226 - -
Amo12g3086 1264 CDD AAA 998 1131 - -
Amo12g3086 1264 Pfam ATPase family associated with various cellular activities (AAA) 1000 1129 IPR003959 GO:0005524|GO:0016887
Amo12g3086 1264 MobiDBLite consensus disorder prediction 1 48 - -
Amo12g3086 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 959 1236 IPR027417 -
Amo12g3086 1264 MobiDBLite consensus disorder prediction 1 65 - -
Amo12g3086 1264 MobiDBLite consensus disorder prediction 343 372 - -
Amo12g3086 1264 Gene3D - 958 1237 IPR027417 -
Amo12g3086 1264 MobiDBLite consensus disorder prediction 310 372 - -
Amo12g3086 1264 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1264 - -
Amo12g3086 1264 SUPERFAMILY SMAD/FHA domain 146 241 IPR008984 GO:0005515
Amo12g3086 1264 ProSitePatterns AAA-protein family signature. 1103 1122 IPR003960 GO:0005524|GO:0016887
Amo12g3086 1264 SMART AAA_5 996 1133 IPR003593 -
Amo12g3086 1264 MobiDBLite consensus disorder prediction 313 330 - -
Amo12g3086 1264 MobiDBLite consensus disorder prediction 550 564 - -
Amo12g3086 1264 MobiDBLite consensus disorder prediction 544 580 - -
Amo12g3086 1264 Gene3D - 145 255 - -
Amo12g3086 1264 Pfam AAA+ lid domain 1153 1189 IPR041569 -
Amo12g3086 1264 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3086 Amo-Chr12 119232554 119242002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3086 995 1200 Calmodulin-binding Proteins AT3G56690 35.407 1.01e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3086 - - gmx:100801477 1946.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3086 12 119232554 119242002 Amo12g3086 12 119232554 119242002 ECH