Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3078 AAAAAAATGAGTGATAACATAGTCTCATCAACACAAACCTTTAATATTAAGTACAACAATACTATCACATTTTCTTCAACAAGTGGAATCTCTTCTTCTTCTTCTCATCATCATAATCATCAAGATGATGGTGGGGTTATCAAAGAGCAAGATCGGTTGCTTCCAATTGCAAATGTTGGGAGAATCATGAAGCAAATCCTTCCAACAAATGCAAAGATCTCAAAGGAAGCAAAGGAGACTATGCAAGAGTGTGTTTCTGAGTTCATAAGCTTTGTGACCGGTGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACCGTTAATGGTGATGATATTTGTTGGGCCTTGGCTACTCTAGGGTTTGATGATTATGCTGAGCCACTCAAAAGTCGCAGAACCCGCCACTACACCTACTTATTCGTCGTTCGAGTCTCCTCTTTGCGATCCCAGGGGAAGACCGCCGCAAGGAGAGGAGATGGCATTGCCAAGATCGAAAAAACGCACCGAAACCTTTCGCCACATCTTCAAGGATCTTCGGTACCAGTCGCTGCTGCCACTCCGTCAACTCAGGGAGTCGCGAGCATTTGCTCTCCCTTCATAGAGGTGTCGTCCTCGGTGCCGTTACCGAGGATCAGCTCTGCTGGTGTTTCTTCATCGCCGCCGCCGCCTCTGTTCAACGCATTGAAGCGTTATTGGAATGATGCGGTGGGTTTGGTGGTGGTTGCGAGTGGTGCCATCCACTGTTCGTACATCAATCTCGACACCGTCAATCCCAATCACGCTAGAACTGGACCTTCAAATTTTAAATGA 813 0.4637 KKMSDNIVSSTQTFNIKYNNTITFSSTSGISSSSSHHHNHQDDGGVIKEQDRLLPIANVGRIMKQILPTNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKSRRTRHYTYLFVVRVSSLRSQGKTAARRGDGIAKIEKTHRNLSPHLQGSSVPVAAATPSTQGVASICSPFIEVSSSVPLPRISSAGVSSSPPPPLFNALKRYWNDAVGLVVVASGAIHCSYINLDTVNPNHARTGPSNFK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3078 270 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Amo12g3078 270 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
Amo12g3078 270 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Amo12g3078 270 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 31 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
Amo12g3078 270 Gene3D Histone, subunit A 45 173 IPR009072 GO:0046982
Amo12g3078 270 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 31 135 - -
Amo12g3078 270 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 117 IPR003958 -
Amo12g3078 270 ProSitePatterns NF-YB/HAP3 subunit signature. 84 100 IPR003956 GO:0005634|GO:0006355|GO:0043565
Amo12g3078 270 SUPERFAMILY Histone-fold 50 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3078 Amo-Chr12 119083562 119089073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3078 31 136 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.650 4.94e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Amo12g3078 CBFD_NFYB_HMF 4.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3078 K08065 - mnt:21392404 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3078 12 119083562 119089073 Amo12g3078 12 119083562 119089073 ECH