Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3049 ATGTCAAACATTTCAGGTGAAGATAATAATAATAATAATGGTAGTTTCTCCTCAGAAGAACAACTACAGGAGAATGAAGAACAGCAACAGTTTCAATTACAAAATCACCCTCATCATCATCATCATCATGGTTCAAGTTCTTCTAGTGCTTGCAAAAACAACAACTCCACAAGTCAAGAACAAAAGCAACAAGTTGGAATCAAGAAGAAAAGAAACCAACCTGGAAATCCAGATCCAAATGCAGAAGTGATTGCATTATCACCAACCACATTAATGGCAACAAATAGATTCATATGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTACATAGGAGAGGTCACAATCTACCATGGAAGCTAAGGCAAAGAGCAACAACAGAAGAGGCGATGAAGAAGAGGGTGTACGTGTGCCCCGAAAAATCGTGTGTGCACCATAACCCTGCCCGAGCACTGGGGGACCTCACTGGGATAAAGAAACATTACAGCAGGAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCATCAGAAAACATGTGGCACTAGAGAATATAAATGTGATTGTGGAACTATATTCTCCAGAAGGGACAGCTTCATAACACACAGGGCCTTTTGTGATGCATTAACTGAGGAAAACAACAGAATAAATCAACAAGGATTAACAAATGGGGTGCCACAAAACTTGCAAAATGAACAAGTCTCTGATCTTATAGCCACAATGCCCCTAAGCAACAGTAATGCATCAGAACTCAACAGCAATAACCATAACAATCCACTTAGAACACTCTCACAAGAGATTGTACCAGTGCCATTCAAGTCCATGAGCATTGGTGGGGGCATTTTCTCCCCAACAAGTTCATCATCAGGTACACTATTTGGTGGTCCAAAGAGCATGCACCCTCTTCCTACCTCTTCTTCAAGCCTTCAACTCAGTTCCAACAACTCCACTGGTTTCAATTACTTCCAAGATAGCAGCAAGAACTTGGGTCTTGTTTCCAGCTCAGCTCACATGTCTGCAACTGCACTATTGCAGAAAGCAGCACAAATGGGTGCTGCTGCAAGCAGCAACAGCATTAACTCCCCCATGATGCAAAAACCCTTTGTTACTACCATGGCCGGTCCTGACCAAGTTTCTGGTGCTGCTACTGCTATGCAGCACCATAACCGTAATAACCCTCCTTCCTATGATCATCACTTCAATCCACAGGCTGATCAATTTTTTCATAAAAGGCAGCAAGAAATGCCACTGATATTTGAAGCTAATAACAATAGTAATGATGGGTCAACAACAAATAATGATATAGGAATGCTTAGCACAATGTTCATGGGAAGTGATCACAATACACAAGAGGTTGGTGCTACTAGTTTGGTCCATGAAAGAGACCTTGCAGAAGGAAATAACCAAATGGGGGCACCAAGGTTTGGTGTCAGTAATGACATGAAAACAGTTCATGATTTCTTGGGAGTTGGAGGGTCAACTTCAAGAGCTACAGGGAATTTGCATGAACCTCAGAGACATCATCATCATCAACAAGAACAACAGAGATTGGAATTAGAAGCATTAAGCCAACAGAGGTTACCACTTATTAATCACTTTCAGCATCACATTCCACATGGAGATTCAACTATGGAGAAATCTGTTTGGGACATATGA 1707 0.4136 MSNISGEDNNNNNGSFSSEEQLQENEEQQQFQLQNHPHHHHHHGSSSSSACKNNNSTSQEQKQQVGIKKKRNQPGNPDPNAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRATTEEAMKKRVYVCPEKSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRINQQGLTNGVPQNLQNEQVSDLIATMPLSNSNASELNSNNHNNPLRTLSQEIVPVPFKSMSIGGGIFSPTSSSSGTLFGGPKSMHPLPTSSSSLQLSSNNSTGFNYFQDSSKNLGLVSSSAHMSATALLQKAAQMGAAASSNSINSPMMQKPFVTTMAGPDQVSGAATAMQHHNRNNPPSYDHHFNPQADQFFHKRQQEMPLIFEANNNSNDGSTTNNDIGMLSTMFMGSDHNTQEVGATSLVHERDLAEGNNQMGAPRFGVSNDMKTVHDFLGVGGSTSRATGNLHEPQRHHHHQQEQQRLELEALSQQRLPLINHFQHHIPHGDSTMEKSVWDI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3049 568 MobiDBLite consensus disorder prediction 508 530 - -
Amo12g3049 568 Gene3D Classic Zinc Finger 75 150 - -
Amo12g3049 568 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Amo12g3049 568 MobiDBLite consensus disorder prediction 47 63 - -
Amo12g3049 568 Gene3D Classic Zinc Finger 153 233 - -
Amo12g3049 568 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Amo12g3049 568 MobiDBLite consensus disorder prediction 1 82 - -
Amo12g3049 568 SMART c2h2final6 175 195 IPR013087 -
Amo12g3049 568 SMART c2h2final6 97 119 IPR013087 -
Amo12g3049 568 SMART c2h2final6 140 170 IPR013087 -
Amo12g3049 568 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 38 531 - -
Amo12g3049 568 MobiDBLite consensus disorder prediction 305 327 - -
Amo12g3049 568 SUPERFAMILY beta-beta-alpha zinc fingers 96 196 IPR036236 -
Amo12g3049 568 MobiDBLite consensus disorder prediction 1 32 - -
Amo12g3049 568 Pfam Zinc-finger double-stranded RNA-binding 97 119 IPR022755 -
Amo12g3049 568 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 38 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3049 Amo-Chr12 118640846 118645645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3049 68 376 IDZ Gene Family AT3G50700 54.655 1.91e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo12g3049 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3049 - - ahf:112730641 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3049 12 118640846 118645645 Amo12g3049 12 118640846 118645645 ECH