Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3046 ATGGCTGCAAGATTTGTGGGAGAAGCTTTTCTCAACTCTGCACTTGGCACTATCTACGACATGCTGATTTCACCCTTACTTGTCAACTTCATCCAGAGAAAGAAGCTTAACCGGAAGCTGGTTGAGAAGCTGGAGACAGTTCTGAAGGCTGCTCATGCTGTGATCAATGACGCCGAGCGGAGGCAGATCGAGGAGGAGGATGTGAAGTACTGGCTGGACAGGCTGAAAGATGCTGTGTACGATGCTGAAGACATACTTGATGAAGTCACCACTAAAGCTGCCATTCAAAAGGTTCAAGGTAACTCTCTGTCTCGCTATGTCAATTTGCACGGTGATGGTGAAATAGTAACCAAGATAGAAGAGATCATTGCTGCATTAGAGTCAATTGTAAATGAGAAAGATGGTCTTGGCTTGAAGGAGATACCGGTGGAGGACATGTCATGGAGGATCCCCTCAACATCTCTGGTTGGTGTGCATCAAATATATGGCAGGGACCAAGATAGGGAGGCCATAGTAAAACTGTTGTTAGATGTTACCAATGACGGTGGAATATCAGTGATTCCTATGGTCGGCATGGGTGGAATAGGAAAGACTACTTTGGCTCAGATGGCATGGGTTTGTGATGGGCAAGAAGAATTTGATGTTCTTAAGGCGACAAAGACAGTGATGGAGAATGTAACTTCTAGTTCTTGCGACTCAACTGAGTTAAACACAATTCAGGAGAGTTTGAAGGAAGTCCTATCAGGGAAGAAGTTGTTGGTTGTTTTGGACGACATGTGGAGTAACAATTATGATGCCTGGATAAGTTTTTTAAAGCCTTTCAAATCTAGTAACGGGGGTGTTAAGATTCTTGTAACAACCCGTCTTGATTCGATTGCTGATATGGTGAAAACTATTCCAACTTTCCATTTGAGTTTGTTGGGTGATGATCACTGCTGGTCAGTGTTTGCAGATCATGCATGTCTTAATTCTGCTGAACCTCATATCCGTTCTGCTTTAGAAGTAGTTGGTCGAAAAATTGTCAAAAAGTGTAATGGGTTAGCTTTGGCTGCTCAAACACTTGGAGGTTTATTAAGAGCAAGAAAAGAAGTAGCGAATTGGGAGTTTATATTGAGGAGTGAAATTTGGGAACTTCCCAAAAAAGATAGTGGGATTCTTCCTGCATTAAGAATCAGTTATCACTACCTCCCTTCACACTTAAAACGTTGCTTTGTTTATTGTTCTTTATTCCCAAAAGACTATGAATTCCAAAGAGATGAACTGGTGTTATTGTGGATGGCAGAAGGTCTTTTGCAGCAACCAAAGAGTGGCAGCACTTTAGAAGAAGTTGGTTCTAAATATTTTAATGATTTGGTTTCGAGATCATTTTTCCAACATTCTAACACCGATGAAGGATATTTTGTGATGCACGATCTCATGCATGATTTATCAATATTCTATGGTGGAAAGTTCTTTTCTAGAAACTTTGAACTCGAAACTGCAGACAAGCATGATGCTTGTCCTCGTCATCTTTCATATGATGGTTGGATCGATGATTCGCTATTCTCAGAGATATTGGAAGTATGTGGTTGTTTAAAAAATGCAAGGACATTGCTTTATATCGGTTTTTATACGTGGGATCTTTCCCCAGAGGAATATGATCCTTGTCGCTTACTTGCACAGTTGAAGCACTTAAGGGTTTTGTCATTTCAATTCCTTCCTCTTGATGATTCAATAAGTGATTTGATCCATTTGCGTTATTTGGATCTCTCTTGTACACCTATGGTGACATTGCCAGAGTCAATGAGCAAATTGTATAATTTACAAACACTGAAGTTTACTGGTGGATATCTAGAAAAGCTTCCAAGCAACATGCAGGATCTTGTAAATTTGCTTCATTTGGATCTCTCTTCTACGGCAATTGAGGTATTGCCCGAGTCATTGAGCAAATTGCATAATTTACAAACGTTGAAGTTGAGAGAGTGTGAAAACCTGAAAAAGCTTCCAAGCAAGATGCAAGATCTTATAAATTTGCACCATCTCGATATTGAAGGTACTAAAATAGAAGAGATGCCGAAAGGGATGAGCAAATTAAAAGACCTACAGATTTTATGTTACTATATTGTCGGCGAGCGTGAAGAGAATGGGATAGGGGAATTGGGAGAACTTGTAAATCTTCAAGGGTCATTTCGTATTAAGAAATTAGAGAATGTGGTTGATAGCAGTGAAGCTTGGAAAGCAAGGATGGTTGATAAGAAATACATCAGTGATCTATATTTGAAGTGGTCATCAGGTGAAGATAGTGATATTGTTAATTCCCAAATCGAAAAAGATGTGCTTTGCAAATTAGAACCTCACAATGACCTGAAATATCTAAAAATAAAGGGTTACAGGTGTACCGTGTTTCCGGATTGGGTAGGGCAGTCTTCGTACCACAACATGACTGAATTGGAGCTGTGGAAATGCAGGAATTGTTGTGTGGTTCCTTCACTTGGACAGTTACCCTCTCTGGAGAGGCTGGTCATTAGAGAGCTCGACAAGGTGAAGAAGATTGGTGGGTCATTCTATAAGGGTGATGGAACTCATCAGCATCAGGAGACACCCTTCCGATCCCTTAAATCTCTGGAATTTTATTATATGTGTTGCTGGGAGGAATGGGAGTCATATGAATGTGATGATGATGATGATGATGCACCATTTCCGAAACTTGAGAAGCTCCGTATTTCTGAATGTCCAAAGTTAAGAGGAGATTTGCCCACTTTCCTTCCGTCTTTGAAAGAACTTGTCATTTCAGGATGCGAGGAGCTTGGTTGTTATCTGCCAAGAGCTCCCATCATTCGCGAATTAAGAATATTTTGCAAACAGGAAGCAAGAATGTGGGACCTATCACTTTCAATGTTGGAGAAACTATCCATTAATGGAGAGCAGCAGGTGGAGTATGTGTTTGATGCCATCCATATCATTTTCAGGGATTCTTTGCCCCCTTCATTGAAAGAGCTGTACATCTACGATTGCAAGAATGTAGAATTCACAATGCAACACCAACAACATCAGTCACTAACGAATCTTACAATACAGAACAGCTGTGATTCGCTTACATCCTTCGCATTGCCAGCATTCCCAAATCTCAAGGATCTCAGAATCGCAAGACGTGAAAATTTGACATCTCTGGAGGTGTCACAGTCACAGTCCCTCCGAGAATTATGGATTGAAGAATGCCCTAAGCTGGAGAACATAATAAGGCTGCCTGCCTCTTTAGAGACTCTCAAAATCAGAGCATGTCCGTTGTTGGCATCTCATGAATTCCACCATGGCTCTATCAATTCAGAGCTCTTTGGCGCCGCTCAGATCCCTGGGAGCTCCAAGATGGGGCGGTGGATTACCAACATGGCTGCAAGATTTGTGGGGGAAGCTTTTCTCAACTCTGCACTTGGCACTATCTACGACATGCTGATTTCACCCTTACTTGTCAACTTCATCCAGAGAAAGAAGCTTAACCGGAAGCTGGTTGAGAAGCTGGAGACAGTTCTGAAGGCTGCTCATGCTGTGATCAATGACGCCGAGCGGAGGCAGATCGAAGAGGAAGATGTGAAGAACTGGCTGGACAGGCTGAAGTATGCTGTGTACGATGCTGAAGACATACTGGATGAAGTCACCACCAAAGCTGCCATTCAAAAGGTTCAAGGTAACTCTCTGTCTCGCTATGTCAATTTGCATGGTGATGGTGAGATAGTAACCAAGATAGAAGAGATCATTGATGCATTAGAGACAATTGTAAATGAGAAAGATGGTCTTGGCTTGAAGGAGATACCGGTGGAGGACATGTCGTGGAGGATCCCCTCAACATCTCTGGTTGATGTGCATCAAATATATGGCAGGGACCAAGATAGGGAGGCCATAGTAAAACTGTTGTTAGATGTTACCAATGACGGTGGAATATCCGTGATTACTATGGTCGGCATGGGTGGAATAGGAAAGACTACTTTGGCTCAGATGGTTTACAATGATGACCGAGTGAAACAAAAATTTGATGTTAAGGCATGGGTTTGTGATGGGCAAGAAGAATTTGACGTTCTTAAGGTGACAAAGGCTGTGATGGAAGCAACTTCTAGTTCTTGCAGCTCAACTGAGTTAAACACAATTCAGGAGAGCTTGAAGAAAGTCCTAGCAGGGAAGAAGTTGTTGGTTGTTTTGGATGACATGTGGAGAAACAATTATGATTACTGGATAAGTTTTCTAAAGCCTTTTAAATCTAGTAACGGGGGTGTTAAGATTCTTGTAACAACCCGTCTTGATTCCACTGCTGATATGGTGAAAACTCTTCCAACTTACCATTTGAGTTTGTTGGGTGATGAGCACTGCTGGTCAGTGTTTGCAGATCATGCATGTCTTAATTCGGCTGAATCCCATAGCCGTTCTGATCTAGAAAAAGTTGGTCGAAAAATTGTCAAGAAGTGTAATGGGTTAGCTTTGGCTGCTCAAACACTTGGAGGTTTATTAAGAGCAAGAAAAGAAGTAGCGGATTGGGAGTTTATATTGAGGAGTGAAATTTGGGAACTTCCCAAAAAAGATAGTGGGATTCTTCCTGCATTGAGAATCAGTTATCACTACCTCCCCTCGTACTTAAAACGTTGCTTTGTTTATTGTTCTTTATTCCCAAAAGACAATAAATTCAAAAGAGATGAACTGGTGTTATTGTGGATGGCAGAAGGTCTTTTGCAGCGACCAAAGAGTGGCAGCACTTTAGAAGAAGTTGGTTCTAAATATTTTAATGATTTGGTTTCGAGATCATTTTTCCAACATTCTAACACTGATGAAAATTTATTTGTGATGCACGATCTCATGCATGATTTAGCAATATTCTACGGTGGAAAGTTCTTTTCGAGAAACTTTGAACTCAAAACTGCAGACAAGCATGATGCTTGTCCTCGTCATTTTTCAGATGGTCTTGGCATCGATGATTCGTTATTCTCGGAGATCTCGGAAGTACGTGATTGTTTGAAAAATGCAAGGACATTGCTGGATATCGATTTTGAAATATGGAAGGATTCCATAGAGGAAATTGATCCTTGTCGCTTACTTGCACAGTTGAAGCACTTAAGGGTTTTGTCATTTAAATTCTTTTGTGTTGTTGATCATGATTCATTGCTTGATTCAATAGTTCATTTGATCCATTTGCGTTATTTGGATCTCTCTTATTTATCTATCGAGACATTGCCAGAGTCAATGAGCAAATTGTATAATTTACAAACACTGAAGTTGAATGATTGTGAAAGACTAGAAAAGCTTCCAAGCAACATGCAGGATCTTGTAAATTTGCTTCATTTGGATCTCTCTCATACGCCAATTAAAGTATTGCCCGAGTCATTGAGCAAATTGCATAATTTACAAACGTTGAAGTTGAGTCATTGTGAAAGACTAAAAAAGCTTCCAAGCAACATGCAGGATCTTGTAAATTTGCACCATCTCGAAATTGAAGGTACTAAAATAGAAGAGATGCCGAAAGGGATGAGCAAATTAAAAGACCTACAGATTTTATGTTACTATATTGTTGGGAAGCATGAAGAGAATGGGATTGGGGAATTGGGAGAACTTGTAAATCTTCAAGGGTCATTTTGTGAAGATAGTGATATTGTTGATTCCCAAATCGAAAAAGATGTACTTGCCAAATTAGAACCTCACAAAGACTTGAAGAGGCTAAGCTTATGGGGTTACAGAGGTACCATGTTTCCGGATTGGGTAGGGCAGTCTTCGTACCACAACATGACTAAGTTGGAGCTGTTGGGATGCAGGAATTGTTGGGTGCTTCCTTCACTAGGACAGTTACCCTCTCTAAAGAGATTGGAGATTTCACGATGTGAGAAGCTGAAGATGATTGGTGGCTCATTCTATAAGGATGATGGAACTCATCATCATCAGGAGACACCCTTCCGATCCCTTAAACATCTCTCATTTTTTTACATGCCTTGCTGGGAGGAATGGGAGTCATTTGAATGTGACGAAGATGATGCACCATTTCCTCAACTTGAGCATCTTTCGATAGTGAACTGTCCCAAGTTAAGAGGAGATCTCCCCACTTTCCTTCCGTCTTTGAAATCACTTTGGATTGAAGAATGCGAGGAGCTTGGTAGTTATCTGCCAAGAGCTCCCATGTTATGCCATTTACAAATATACGGCACAAAGGAAGCAAGAATTCGGGAGCTACCACTTTCGATGTTGCAAACTCTATCCGTTGATGGAGGGCAGCCAGTGGAGTATGTGTTTGATGCCATGACTCACACCCAACCAACCTCTCTCGCAGAGTTAAGAATCTTAAACTGCTCATCAGCCATATCATTTCCAGGGGATTCTCTGCCCCCTTTATTGCAAGAGCTATCAATCAAGGATTGCAAGAATGTGGAATTCCCAATGCAACAGCAACAACATGAGTCACTAACGAGTCTTGAAATAGACAACAGCTGTGATTCACTTACATCCTTCCCATTGTCAGCGTTCCCAAATCTCAGGTCCTTCATAATCGCAAGACGTGAAAATTTGACATCTCTAGAGGAGCTGTCACAATCACAGTCCCTTCGAGAATTACGGGTTGAAGAATGTTCTAAGCTGGAGAACATAAGGTTGCCTGCCTCTTTAAGTCGACTCTTCATTATTAAATGTGGGTTGTTGGGTGAAGGCATAGAGAGGAAGGATCCCAACATTTGGCCATCCATTTCCCACACCCCCCACATTTTTGGTACATCAAACATGTCATCAGCTCCACCATGGCTCTATCTATTCAGAAATCTTTGGCGCCGCTCAGAGTTCCTGGAGCTCCAAGATGGGCAGATGGATTATGTTACTCATCCTTAG 6828 0.4129 MAARFVGEAFLNSALGTIYDMLISPLLVNFIQRKKLNRKLVEKLETVLKAAHAVINDAERRQIEEEDVKYWLDRLKDAVYDAEDILDEVTTKAAIQKVQGNSLSRYVNLHGDGEIVTKIEEIIAALESIVNEKDGLGLKEIPVEDMSWRIPSTSLVGVHQIYGRDQDREAIVKLLLDVTNDGGISVIPMVGMGGIGKTTLAQMAWVCDGQEEFDVLKATKTVMENVTSSSCDSTELNTIQESLKEVLSGKKLLVVLDDMWSNNYDAWISFLKPFKSSNGGVKILVTTRLDSIADMVKTIPTFHLSLLGDDHCWSVFADHACLNSAEPHIRSALEVVGRKIVKKCNGLALAAQTLGGLLRARKEVANWEFILRSEIWELPKKDSGILPALRISYHYLPSHLKRCFVYCSLFPKDYEFQRDELVLLWMAEGLLQQPKSGSTLEEVGSKYFNDLVSRSFFQHSNTDEGYFVMHDLMHDLSIFYGGKFFSRNFELETADKHDACPRHLSYDGWIDDSLFSEILEVCGCLKNARTLLYIGFYTWDLSPEEYDPCRLLAQLKHLRVLSFQFLPLDDSISDLIHLRYLDLSCTPMVTLPESMSKLYNLQTLKFTGGYLEKLPSNMQDLVNLLHLDLSSTAIEVLPESLSKLHNLQTLKLRECENLKKLPSKMQDLINLHHLDIEGTKIEEMPKGMSKLKDLQILCYYIVGEREENGIGELGELVNLQGSFRIKKLENVVDSSEAWKARMVDKKYISDLYLKWSSGEDSDIVNSQIEKDVLCKLEPHNDLKYLKIKGYRCTVFPDWVGQSSYHNMTELELWKCRNCCVVPSLGQLPSLERLVIRELDKVKKIGGSFYKGDGTHQHQETPFRSLKSLEFYYMCCWEEWESYECDDDDDDAPFPKLEKLRISECPKLRGDLPTFLPSLKELVISGCEELGCYLPRAPIIRELRIFCKQEARMWDLSLSMLEKLSINGEQQVEYVFDAIHIIFRDSLPPSLKELYIYDCKNVEFTMQHQQHQSLTNLTIQNSCDSLTSFALPAFPNLKDLRIARRENLTSLEVSQSQSLRELWIEECPKLENIIRLPASLETLKIRACPLLASHEFHHGSINSELFGAAQIPGSSKMGRWITNMAARFVGEAFLNSALGTIYDMLISPLLVNFIQRKKLNRKLVEKLETVLKAAHAVINDAERRQIEEEDVKNWLDRLKYAVYDAEDILDEVTTKAAIQKVQGNSLSRYVNLHGDGEIVTKIEEIIDALETIVNEKDGLGLKEIPVEDMSWRIPSTSLVDVHQIYGRDQDREAIVKLLLDVTNDGGISVITMVGMGGIGKTTLAQMVYNDDRVKQKFDVKAWVCDGQEEFDVLKVTKAVMEATSSSCSSTELNTIQESLKKVLAGKKLLVVLDDMWRNNYDYWISFLKPFKSSNGGVKILVTTRLDSTADMVKTLPTYHLSLLGDEHCWSVFADHACLNSAESHSRSDLEKVGRKIVKKCNGLALAAQTLGGLLRARKEVADWEFILRSEIWELPKKDSGILPALRISYHYLPSYLKRCFVYCSLFPKDNKFKRDELVLLWMAEGLLQRPKSGSTLEEVGSKYFNDLVSRSFFQHSNTDENLFVMHDLMHDLAIFYGGKFFSRNFELKTADKHDACPRHFSDGLGIDDSLFSEISEVRDCLKNARTLLDIDFEIWKDSIEEIDPCRLLAQLKHLRVLSFKFFCVVDHDSLLDSIVHLIHLRYLDLSYLSIETLPESMSKLYNLQTLKLNDCERLEKLPSNMQDLVNLLHLDLSHTPIKVLPESLSKLHNLQTLKLSHCERLKKLPSNMQDLVNLHHLEIEGTKIEEMPKGMSKLKDLQILCYYIVGKHEENGIGELGELVNLQGSFCEDSDIVDSQIEKDVLAKLEPHKDLKRLSLWGYRGTMFPDWVGQSSYHNMTKLELLGCRNCWVLPSLGQLPSLKRLEISRCEKLKMIGGSFYKDDGTHHHQETPFRSLKHLSFFYMPCWEEWESFECDEDDAPFPQLEHLSIVNCPKLRGDLPTFLPSLKSLWIEECEELGSYLPRAPMLCHLQIYGTKEARIRELPLSMLQTLSVDGGQPVEYVFDAMTHTQPTSLAELRILNCSSAISFPGDSLPPLLQELSIKDCKNVEFPMQQQQHESLTSLEIDNSCDSLTSFPLSAFPNLRSFIIARRENLTSLEELSQSQSLRELRVEECSKLENIRLPASLSRLFIIKCGLLGEGIERKDPNIWPSISHTPHIFGTSNMSSAPPWLYLFRNLWRRSEFLELQDGQMDYVTHP* 2276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3046 2275 Coils Coil 1163 1183 - -
Amo12g3046 2275 SUPERFAMILY L domain-like 524 939 - -
Amo12g3046 2275 Gene3D Ribonuclease Inhibitor 615 944 IPR032675 -
Amo12g3046 2275 CDD RX-CC_like 1129 1251 IPR038005 -
Amo12g3046 2275 SUPERFAMILY L domain-like 2039 2214 - -
Amo12g3046 2275 Gene3D Ribonuclease Inhibitor 509 614 IPR032675 -
Amo12g3046 2275 Pfam Rx N-terminal domain 11 102 IPR041118 -
Amo12g3046 2275 Pfam Rx N-terminal domain 1133 1224 IPR041118 -
Amo12g3046 2275 SUPERFAMILY L domain-like 893 1095 - -
Amo12g3046 2275 Gene3D - 1442 1526 IPR042197 -
Amo12g3046 2275 Gene3D - 307 391 IPR042197 -
Amo12g3046 2275 Gene3D Ribonuclease Inhibitor 1648 2064 IPR032675 -
Amo12g3046 2275 PANTHER OS05G0414200 PROTEIN 1776 2152 - -
Amo12g3046 2275 SUPERFAMILY L domain-like 1656 2036 - -
Amo12g3046 2275 PRINTS Disease resistance protein signature 1479 1493 - -
Amo12g3046 2275 PRINTS Disease resistance protein signature 1381 1395 - -
Amo12g3046 2275 PRINTS Disease resistance protein signature 1308 1323 - -
Amo12g3046 2275 PRINTS Disease resistance protein signature 1933 1949 - -
Amo12g3046 2275 PANTHER DISEASE RESISTANCE PROTEIN RP 30 631 IPR044974 GO:0006952
Amo12g3046 2275 PANTHER DISEASE RESISTANCE PROTEIN RP 631 972 IPR044974 GO:0006952
Amo12g3046 2275 PANTHER OS05G0414200 PROTEIN 30 631 - -
Amo12g3046 2275 PANTHER OS05G0414200 PROTEIN 1152 1772 - -
Amo12g3046 2275 PANTHER OS05G0414200 PROTEIN 631 972 - -
Amo12g3046 2275 Coils Coil 41 61 - -
Amo12g3046 2275 Gene3D - 147 300 IPR027417 -
Amo12g3046 2275 Gene3D - 1268 1434 IPR027417 -
Amo12g3046 2275 CDD RX-CC_like 7 129 IPR038005 -
Amo12g3046 2275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1270 1542 IPR027417 -
Amo12g3046 2275 Gene3D Ribonuclease Inhibitor 2065 2224 IPR032675 -
Amo12g3046 2275 PANTHER DISEASE RESISTANCE PROTEIN RP 1152 1772 IPR044974 GO:0006952
Amo12g3046 2275 PANTHER DISEASE RESISTANCE PROTEIN RP 1776 2152 IPR044974 GO:0006952
Amo12g3046 2275 Gene3D Ribonuclease Inhibitor 945 1108 IPR032675 -
Amo12g3046 2275 Pfam NB-ARC domain 1288 1506 IPR002182 GO:0043531
Amo12g3046 2275 Pfam NB-ARC domain 166 371 IPR002182 GO:0043531
Amo12g3046 2275 Gene3D - 14 122 - -
Amo12g3046 2275 Gene3D - 1136 1250 - -
Amo12g3046 2275 SMART LRR_typ_2 1763 1786 IPR003591 -
Amo12g3046 2275 SMART LRR_typ_2 621 644 IPR003591 -
Amo12g3046 2275 SMART LRR_typ_2 575 598 IPR003591 -
Amo12g3046 2275 SMART LRR_typ_2 668 691 IPR003591 -
Amo12g3046 2275 SMART LRR_typ_2 1716 1739 IPR003591 -
Amo12g3046 2275 SMART LRR_typ_2 1810 1833 IPR003591 -
Amo12g3046 2275 Gene3D - 1527 1613 IPR036388 -
Amo12g3046 2275 Gene3D - 392 478 IPR036388 -
Amo12g3046 2275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 407 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3046 Amo-Chr12 118579915 118614712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3046 1306 1954 WRKY Transcription Factor Family AT5G45050 23.382 2.03e-15 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3046 - - aip:107626171 1742.24