Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3017 ATGAAGGAAAAAGTGGATTCACCAGTTACAGTTCTTGAGGACTATTTCAGGTCCTCAGATTCATCAGAAACAAGTTGTTCAAAAGATCATGATCATAGTTGTTTGGATTCTGAGTCTCAAGAAATTTCAAGGCCAAGTTGTTCAAGGTGGCATTCATTTGTTCAAATTTTGAAGGGAAAATCATCATCCAAGAACAACACATTGTTGCACCCTTTGAACATATCAAGAAGAATGAGTAGTAGCATGAGAGAATCTCTATGGCCAAGTTGCCTCTTAGATGTTGCAAGCCCTTCACCTTGTAGGTCACCTTGGAAGATCTTCTCTCACCATGATATTCAACTAGCAACCAATCATTTCAGCCAAGAAAACTTGATTGGAAAAGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTACCAAATAATCAGCTTGTAGCAATTAAGAGGCTAACAAGAGGAACTGCTGATGAGATCATAGGTGACTTTTTATCAGAACTTGGAGTTATGGCACATGTCAATCACCCCAACACTGCTAAGCTTGTTGGTTATGGTGTGGATGGTGGAATGCACCTTGTTCTTGAATTGTCTGAGAAAGGGAGCTTAGCTTCACTGCTTTATGGTTCCAAGGAGAAATTAGCATGGTGCATCAGGCAAAAAATTGCAGTAGGAACAGCAAAGGGTATATTATATCTTCATGAGGGTTGTCAAAGAAGAATAATTCATAGAGATATAAAAGCTGCAAATATATTGCTCACTGAGGACTATGAGCCTCAGATATGTGACTTTGGGCTAGCAAAATGGCTACCGGAGAATTGGACTCACCACACTGTTTCAAAATTTGAAGGAACTTTTGGGTACCTTGCACCTGAGTACTTGCTTCATGGAATTGTTGATGAGAAAACAGATGTATTTGCTTTTGGTGTGCTTCTATTAGAATTGGTCAGTGGAAGGCGTGCACTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCATTGCTGAGAAAGAATGAAATTAAGGAGCTGATTGATCCATCACTAGATGAAGAATTTGACACAAGGGAGTTGAATCTCATGTTATTGGCAGCTTCTTTGTGCATTCAACAATCTTCAATTCGTCGCCCCTCTATCAGACAGGTTGTTCAACTTTTAAATGGAAATCTCAGCTGCTTTAAGGGCGTGAAGAAAACTAGATTTCCATTCTTCAGAAAAGTCTTCCAAGAAGAACTCCTTGATTCTGAATAA 1245 0.3928 MKEKVDSPVTVLEDYFRSSDSSETSCSKDHDHSCLDSESQEISRPSCSRWHSFVQILKGKSSSKNNTLLHPLNISRRMSSSMRESLWPSCLLDVASPSPCRSPWKIFSHHDIQLATNHFSQENLIGKGGYAEVYKGCLPNNQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMHLVLELSEKGSLASLLYGSKEKLAWCIRQKIAVGTAKGILYLHEGCQRRIIHRDIKAANILLTEDYEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLRKNEIKELIDPSLDEEFDTRELNLMLLAASLCIQQSSIRRPSIRQVVQLLNGNLSCFKGVKKTRFPFFRKVFQEELLDSE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3017 414 PANTHER OS08G0249100 PROTEIN 1 413 - -
Amo12g3017 414 Gene3D Phosphorylase Kinase; domain 1 93 193 - -
Amo12g3017 414 ProSiteProfiles Protein kinase domain profile. 119 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3017 414 SMART serkin_6 119 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3017 414 Pfam Protein kinase domain 120 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3017 414 ProSitePatterns Protein kinases ATP-binding region signature. 125 147 IPR017441 GO:0005524
Amo12g3017 414 Gene3D Transferase(Phosphotransferase) domain 1 196 396 - -
Amo12g3017 414 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 413 - -
Amo12g3017 414 SUPERFAMILY Protein kinase-like (PK-like) 96 384 IPR011009 -
Amo12g3017 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3017 Amo-Chr12 117794711 117800523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3017 106 380 Trihelix Transcription Factor Family AT1G68690 41.608 1.54e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo12g3017 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3017 - - gmx:100780587 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3017 12 117794711 117800523 Amo16g0648 16 10522937 10528282 ECH
Amo12g3017 12 117794711 117800523 Amo19g1760 19 49631678 49632607 ECH
Amo12g3017 12 117794711 117800523 Amo12g3017 12 117794711 117800523 ECH
Amo16g0054 16 792950 794834 Amo12g3017 12 117794711 117800523 ECH
Amo14g0478 14 6699027 6701417 Amo12g3017 12 117794711 117800523 ECH
Amo16g0054 16 792950 794834 Amo12g3017 12 117794711 117800523 PCT
Amo06g0442 06 6273619 6276098 Amo12g3017 12 117794711 117800523 PCT
Amo12g3017 12 117794711 117800523 Amo16g0054 16 792950 794834 PCT
Amo12g3017 12 117794711 117800523 Amo06g0442 06 6273619 6276098 PCT