Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3011 ATGACCATTTTACCCCTCTTCCTTTTCTTCTTCTTTCTCCCACTACCATCCCTCTCCCAACAACCGCCACCACCACCACCACCCTCATCATCATCATGCCCTCTTAACTTCACCATCCTCTACACCCTCACCGGCACCGGAAACACCCCAACCTCTTACTCCGCCGCCTCCGGAACCACGGTCACAAACACCAAGTGCCAGTTCATCCGCCAATCCTTCCGCCTCCTCCAGTCCGACCTCCTCCGCCGCACCGACAACTTCATGCCACCCCTCTCCGCCTCCGTCTCGTGCTGGTCCAACTTCCAATCCTACATCAACTCCTTCGACCCCACCTTCCATATTCAATCCTCATGCGGATTCTCCAACGCTTCAATTTCCCAAGGTTGCGTCAACATCACCACAAGGCAACGCTTTGAATCGTTGGTATCCTCTTCCGTGCTTCAAAATGTGGATACTAGTTGTAACCAGTCCCTTGAGAATAACTCGCCATGCGCACTCTGCACTACAAGCTTGTCTTCTTTACCAGCTTCTGGTAAATATCTTGGGAACCTCAGTGATTGCACTTCTCTGCCTTCTGTTTATGCTGCTGCTTTTAGCAACGCTTTTGGCCCTTCTGACCCTGGCACTGCAAAGTGCTTGTTCTCCCTTGATTTCACGCCTTTCGGCGATTCTAACAACAAGAAGAACAAGAAGAAGATTGTTGTTTCTGTCGTTGTCACCTTTATTTCTGTTTCGGGTTTGGTTTTCGTGGCTTTGGGATTGTGGAAGTTGAATGAAAAGTTGAGTGGTAAAAATGTTAGTGTTGCTGAAATGGGTTTGGTTTCTTCTTCAAGTGTTATGTGTTTGGATTATTCTTCTATGGATCAGAGCACTACTTTGATAAGATTCAGTATTGAGGATATTAAGAAAGCTACTAAGAATTTCTCAAGAGATAACATAATTGGAAGAGGAGGTTATGGCAACGTTTACAAAGGGTTGCTAAATGATGGAACTGAGGTTGCATTGAAGAGGTTCAAGAACTGTTCTGCTGCTGGTGATTCCAGCTTCAAGCATGAGGTTGAGGTTATTGCAAGTGTTAGGCATGTGAATCTTGTTGCATTAAGAGGATATTGCAGTGCCACAACAAATTTAGAAGGGTACCAAAGAATCATTGTTTGTGATTTAATGAAAAATGGTAGCCTTCATGACCATTTATTTGGCGGCGGTTCTTCTTCTTCAATTGGGCTTAATAATAAGCTAAGTTGGCCAATTAGGCAAAAGATTGCACTAGGAACTGCTAGAGGAATTGCTTATTTGCATTATGGTGCTCAACCTTCCATAATTCATAGAGATATCAAAGCAAGTAACATTCTTTTAGACGAAAAATTCGAGGCTAAGGTAGCCGATTTCGGTCTAGCAAAGTTTAATCCTGAAGGTATGACACATATGAGCACAAGGGTAGCTGGAACAATGGGTTATGTGGCTCCGGAATATGCTTTGTATGGTCAATTAACAGAGAGAAGTGATGTTTTCAGCTTTGGTGTTGTGCTTCTTGAGCTTCTAAGTGGAAAGAAAGCACTTTCAATGAGCAATGACGGTCAACCTTCTGCGTTGACCGATTGGGCATGGTCAATGGTTAGAACAAACAAGGCCTTAGATGTGATTGAAGATGGAATGCCTGAACTTGGGTCACCCAAGATTCTTGAGAAATATGTTTTGATTGGTGTGCTCTGTTCTCATCCTCAATTGTATGCTAGGCCTACTATGGATCAAGTTGTTAAGATGATGGAAACGGATCAAGATGTTGGAGATAATGAGGAGAACATGGTGCCGGCTATACCGGATCGGCCGATCCCTCTGGTGGCCGGAAGGGTTGATATAGAGAGATCGGCCAGTAGTAGTGGCGGCGGCGGCAGCGGCGGCTCTGGTGGACTATCTAGTCCTACAGGGTACCAAGCTTATACAATTGGAAGTAATAAGCATTCTTCTAATAACTCTAAGGAAGATGGAAGTTCAAGCTCCAAGATTTTGAGTATAGAAGAATGA 2025 0.4449 MTILPLFLFFFFLPLPSLSQQPPPPPPPSSSSCPLNFTILYTLTGTGNTPTSYSAASGTTVTNTKCQFIRQSFRLLQSDLLRRTDNFMPPLSASVSCWSNFQSYINSFDPTFHIQSSCGFSNASISQGCVNITTRQRFESLVSSSVLQNVDTSCNQSLENNSPCALCTTSLSSLPASGKYLGNLSDCTSLPSVYAAAFSNAFGPSDPGTAKCLFSLDFTPFGDSNNKKNKKKIVVSVVVTFISVSGLVFVALGLWKLNEKLSGKNVSVAEMGLVSSSSVMCLDYSSMDQSTTLIRFSIEDIKKATKNFSRDNIIGRGGYGNVYKGLLNDGTEVALKRFKNCSAAGDSSFKHEVEVIASVRHVNLVALRGYCSATTNLEGYQRIIVCDLMKNGSLHDHLFGGGSSSSIGLNNKLSWPIRQKIALGTARGIAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALSMSNDGQPSALTDWAWSMVRTNKALDVIEDGMPELGSPKILEKYVLIGVLCSHPQLYARPTMDQVVKMMETDQDVGDNEENMVPAIPDRPIPLVAGRVDIERSASSSGGGGSGGSGGLSSPTGYQAYTIGSNKHSSNNSKEDGSSSSKILSIEE* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3011 674 PANTHER OS01G0253100 PROTEIN 30 656 IPR045271 GO:0004714|GO:0006468
Amo12g3011 674 MobiDBLite consensus disorder prediction 625 674 - -
Amo12g3011 674 CDD STKc_IRAK 314 590 - -
Amo12g3011 674 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 30 656 - -
Amo12g3011 674 ProSiteProfiles Protein kinase domain profile. 308 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3011 674 SMART serkin_6 308 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3011 674 Gene3D Phosphorylase Kinase; domain 1 274 387 - -
Amo12g3011 674 Pfam Protein kinase domain 309 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g3011 674 Gene3D Transferase(Phosphotransferase) domain 1 389 605 - -
Amo12g3011 674 SUPERFAMILY Protein kinase-like (PK-like) 287 590 IPR011009 -
Amo12g3011 674 MobiDBLite consensus disorder prediction 622 674 - -
Amo12g3011 674 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Amo12g3011 674 Pfam SPARK 29 176 IPR043891 -
Amo12g3011 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3011 Amo-Chr12 117745750 117747866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3011 31 658 Receptor kinase-like Gene Family AT2G48010 59.464 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Amo12g3011 Pkinase 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3011 - - gmx:100800760 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3011 12 117745750 117747866 Amo12g3011 12 117745750 117747866 ECH
Amo16g0053 16 787720 789990 Amo12g3011 12 117745750 117747866 ECH
Amo06g0443 06 6278871 6281284 Amo12g3011 12 117745750 117747866 PCT
Amo12g3011 12 117745750 117747866 Amo06g0443 06 6278871 6281284 PCT