Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2991 ATGGATTATGGTAATAAGTACACTATTCCAACACCTGGAATCAAAGTGTTGGTGGTGGATTGTGATTCAACATCTCTAACATTGGCATCTAAAATGCTTCGTATCCTTGGATATGAAGTTGTGACTGCTAAACTAGGTTCTGATGCTTTATCAATTATTGAGAAGAATGAGCTTCACCTTGTGCTCATGGAGATTCATTTGCCTGACATGAAAATGTTTGAACTCATTGACAAAATCAGAGAAAGCTATGACATCCCATCTTTCATTATGAGTGCTGATGAAAATCAAACTTCAAAGTCAAAAGCACTAAGCAAAGGAGCTAAACTCTATTTCATAAAGCCACTTCTACTTTCTGATTTAAAGGGCCTCTGGAAATTTGCATCATGCAACACAAAAGTTTCAACAGTAACCACTGATCAAAATGGATCAAAGAGTATCATAGTGAACAAGGATCAAGAATGCAAACCACTGAATAATAATAATAACAAAGAGAAAAAACAAGAACTTGTTGAATCATCAGTGGTCCAGAGAAGGAAAAGAATTAGGTGGACTGATCATTTGCATATGAAGTTCATGGAAGCTGTTATCTTAGCAGGATCTGGTGCTGGTCCTAAGAAAATACATGAGTATATGAATGTGTCAGGAGTCACAAAAGAGCATGTTTCAAGCTATTTACAGAAATATCGCCAATCTTTGAAAGCGCAAGATAGTGAAATTCAATATCAAAGGAAAATGCTATCATCTGAGTTGAATTTAAGATCATACCAATTGAAGGATCTCTTCCATTGCAAGTCAGAGCAATTTCTTGATGCTCCTGCACATCTTCCTTCCACAAAAATTCCAACTGTTCATGAACCAGCTTTGAGCCAAAACCAATTACTCCCAGGGACACTGGTGCAAGGTGAGATGAATGGCAATGGTGTGGAATCTGTGGAGATTAGCCAAGAAGAAAGTTATACTAATGGAAGAGTTTCTGAAGAAGATCAATTAGACCCAAGTGAAGATTTTGAAACAATAATGACAAATACTGAGCCTTGTTTCACTAGCTGGAGTCGGCTACTTGATCCTGAAGAAACTTCTTACGAGGTTTCCTCTAAGGATTATACTGCTGAAAACAGTGAATTGAATTGTTCGATGCCGATGGAGAATGATATGTGTCAACAGTTTCCTGCATTTCCTTCAGTACCATCAGGAAATGTTGATGAGATCTTCAATATTTCAAAGGAAACTGAGAATGCCTCTAACAAGGATTCTGAAGAGGCTACTCTGATAGTGGAAAGAATCACTCTGAATGATGCAGTTACTTGA 1308 0.3739 MDYGNKYTIPTPGIKVLVVDCDSTSLTLASKMLRILGYEVVTAKLGSDALSIIEKNELHLVLMEIHLPDMKMFELIDKIRESYDIPSFIMSADENQTSKSKALSKGAKLYFIKPLLLSDLKGLWKFASCNTKVSTVTTDQNGSKSIIVNKDQECKPLNNNNNKEKKQELVESSVVQRRKRIRWTDHLHMKFMEAVILAGSGAGPKKIHEYMNVSGVTKEHVSSYLQKYRQSLKAQDSEIQYQRKMLSSELNLRSYQLKDLFHCKSEQFLDAPAHLPSTKIPTVHEPALSQNQLLPGTLVQGEMNGNGVESVEISQEESYTNGRVSEEDQLDPSEDFETIMTNTEPCFTSWSRLLDPEETSYEVSSKDYTAENSELNCSMPMENDMCQQFPAFPSVPSGNVDEIFNISKETENASNKDSEEATLIVERITLNDAVT* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2991 435 Gene3D - 8 132 - -
Amo12g2991 435 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 179 230 IPR006447 GO:0003677
Amo12g2991 435 SUPERFAMILY CheY-like 12 127 IPR011006 -
Amo12g2991 435 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 387 IPR045279 GO:0009736
Amo12g2991 435 SMART REC_2 14 124 IPR001789 GO:0000160
Amo12g2991 435 Pfam Response regulator receiver domain 16 120 IPR001789 GO:0000160
Amo12g2991 435 SUPERFAMILY Homeodomain-like 176 233 IPR009057 -
Amo12g2991 435 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Amo12g2991 435 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 13 387 - -
Amo12g2991 435 Gene3D - 174 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2991 Amo-Chr12 117382653 117386117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2991 13 264 Response Regulator Gene Family AT2G25180 30.996 2.56e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo12g2991 Response_reg 1.7e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2991 - - ahf:112728429 770.385