Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2989 ATGGGGAGTTCAGGTACGAACTTGGTGACTACAATAATTGGTTTTGGATTGAGTGCAACATTCATAGTGTTTGTGTGCACAAGAATCATTTGTGGGAGAATTCAAAGGTATATAGCATCATCATCATCTTCATCATCAAGGACTATATATGAATTTCAATCAAGACCAGACATAGAACGGGGAGAACATGATGTTGTTGAGGGAGTACCTGCTTTTGTTTCTGCAATCCCCACTTTAAAGTTCAACAAAGAGGCTTTCAGCTCCGTTGAATGTACACAGTGTGTGATATGTTTGGCAGATTACAAAGAACAAGAATTGTTGAGGATGATACCAAAATGTGGGCACTGTTTTCATGTCTCTTGCATTGATATGTGGCTAAGAAAGCAATCTACATGCCCTGTATGCCGTTTGCCACTTAGAAATGCTCTTGAACAAAAGAATGTGACAAGTTTGGCATTCACAATAAGCCACCACCACTCTCTTGATGAAGAGTATAATACTTCATTACAAAGGAACATTAGTAGTGATGATGAGAGGCCAGTAGTTGATTCTAATTCTAGTAACACCTCACTTCCAATTTCTGTAGGAGAACCTGATATAAGACCCTGA 609 0.3892 MGSSGTNLVTTIIGFGLSATFIVFVCTRIICGRIQRYIASSSSSSSRTIYEFQSRPDIERGEHDVVEGVPAFVSAIPTLKFNKEAFSSVECTQCVICLADYKEQELLRMIPKCGHCFHVSCIDMWLRKQSTCPVCRLPLRNALEQKNVTSLAFTISHHHSLDEEYNTSLQRNISSDDERPVVDSNSSNTSLPISVGEPDIRP* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2989 202 MobiDBLite consensus disorder prediction 172 194 - -
Amo12g2989 202 CDD RING-H2_EL5_like 93 136 - -
Amo12g2989 202 SUPERFAMILY RING/U-box 93 147 - -
Amo12g2989 202 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Amo12g2989 202 Pfam Ring finger domain 93 136 IPR001841 -
Amo12g2989 202 MobiDBLite consensus disorder prediction 172 202 - -
Amo12g2989 202 PANTHER OS11G0150450 PROTEIN 1 173 - -
Amo12g2989 202 PANTHER OS02G0676500 PROTEIN 1 173 - -
Amo12g2989 202 SMART ring_2 94 135 IPR001841 -
Amo12g2989 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2989 Amo-Chr12 117374088 117375920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2989 70 142 C3H Transcription Factor Family AT4G33565 43.836 3.89e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2989 - - adu:107475875 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g3000 04 105775817 105778335 Amo12g2989 12 117374088 117375920 PCT
Amo12g2989 12 117374088 117375920 Amo04g3000 04 105775817 105778335 PCT