Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2986 ATGGTGGAAGATTATGGTGCTGCTGCTGCATCATTTGATGCTAGTTCAACAGAAGAATGGTTGCTTCATGCACAAAAGCTTGTTCCTGCAGCAATGTCTAAAGCAAAAGAGGTTAAAGTTTTCCCAGTCAAGTGGAAGATGATTATCTCGAAATTGGAGCAGATTCCGTCGCGTTTATCGGACTTGTCGAGCCACCCTTGCTTCTCCAAGAATGCTCTCTGCAAGGAGCAATTGCAGTCAGTTTCCAAGTCACTCGAAGAAGCTATCGAATTGGCCGAGCTTTGTTTGAAGGAGAAGTATGAAGGTAAGCTTCGGATGCAGAGTGATCTCGACGCTTTAGCTGGGAAACTCGATTTAAATTTGAAAGATTGCAGCTTGCTCATCAAAACCGGTGTGCTAGGAGAGGCTACTCTGCCTTTGATGGTGTCTGGTTCTGTTCAAGACTCTGATGTAGATTTTGCATCCATTAAGGAATTACTTGCAAGGCTTCAGATAGGTAACTTGGAAGCCAAGCAAAGAGCATTGGAGAAGCTCTATGATGTGATGAAAGAAGATGAGAAGAATGTTTTGGCTGTTCTTGGGAGAAGCAATGTTGCTGCATTGGTTCAATTGCTTACAGCAACATCTCCAAGGATTAGGGAAAAGGCTGCTACTGTGATATGTATTCTTGTGGAATCTGGTAGTTGCGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCACCCCTAATTCGGCTCGTTGAATCCGGTAGTGCTGCAGGGAAAGAGAAGGCCACGGTTTCTCTTCAGAGGCTGTCAATGTCGGCCGAAACCACCCGTGCAATTGTTGGACACGGTGCTGTTCGGCCGTTAATTGAGGTTTGCCAAACAGGGGACTCTGTTTCTCAGGCTGCAGCCGCTTGTGCTTTGAAGAATGCGTCGTCCGTGCCGGAGGTGAGGCAGGTTTTGGCTGAAGAAGGCATTGTGAAAGTGATGATTGAGCTCCTTAGCTCTGGAATTTTGTTGGGAACGAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACAGCGAGCAACGAGAATCTAAGAAGATCTGTCATAGCAGAAGGTGGTTTCAGCAGTCTCCTGGCCTATCTTGATGGCCCTCTTCCTCAAGAATCCGCGGTCGCAGCCCTGAGGAATTTGGTTGGTTCTGTTTCTGAGGATGTTCTGGATTCCCTCGGCTTGCTTCCTCGATTGGTTCACGTGCTTAAGTCGGGTTCCTTGGGAGCCAAGCAAGCTGCAGCCTCTGTCATTTGCCGGATTTGTGGCCCGGTTGAGATGAAAAAAATGATCGGCGAAGCCGGCTGCATACCTCTTCTGATCAATTTGCTTGAGGCTAAAGCAAATAGTGCTAGAGAAGCTGCATCACAAGCAATTTCGAGCTTGATGGTTCTGTCTGCGAATCGAAGAGAGGTTAAGAAGGATGATAAGATTGTGGTGCCAAGTTTGGTTCAGTTGCTTGATCCAAATCCACAGAACACTGCAAAGAAATATGCAGTTTCATGCCTTGCATCACTGTCTTCTTGCAAGAAATGTAAGAAGCTTATGATTTCTTATGGAGCAATAGGGTATCTCAAGAAGCTTAGTGAGATGGAGATTCCTGGATCTAAGAAGCTTCTAGAGAGATTGGAAAGAGGAAAACTCAGAAGCTTGTTTAGCAGAAAATAA 1686 0.4597 MVEDYGAAAASFDASSTEEWLLHAQKLVPAAMSKAKEVKVFPVKWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQSVSKSLEEAIELAELCLKEKYEGKLRMQSDLDALAGKLDLNLKDCSLLIKTGVLGEATLPLMVSGSVQDSDVDFASIKELLARLQIGNLEAKQRALEKLYDVMKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKAATVICILVESGSCENWLVSEGVLPPLIRLVESGSAAGKEKATVSLQRLSMSAETTRAIVGHGAVRPLIEVCQTGDSVSQAAAACALKNASSVPEVRQVLAEEGIVKVMIELLSSGILLGTKEYAAECLQNLTASNENLRRSVIAEGGFSSLLAYLDGPLPQESAVAALRNLVGSVSEDVLDSLGLLPRLVHVLKSGSLGAKQAAASVICRICGPVEMKKMIGEAGCIPLLINLLEAKANSAREAASQAISSLMVLSANRREVKKDDKIVVPSLVQLLDPNPQNTAKKYAVSCLASLSSCKKCKKLMISYGAIGYLKKLSEMEIPGSKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2986 561 SMART arm_5 350 389 IPR000225 GO:0005515
Amo12g2986 561 SMART arm_5 471 514 IPR000225 GO:0005515
Amo12g2986 561 SMART arm_5 185 225 IPR000225 GO:0005515
Amo12g2986 561 SMART arm_5 308 349 IPR000225 GO:0005515
Amo12g2986 561 SMART arm_5 430 470 IPR000225 GO:0005515
Amo12g2986 561 SMART arm_5 267 307 IPR000225 GO:0005515
Amo12g2986 561 SMART arm_5 392 429 IPR000225 GO:0005515
Amo12g2986 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Amo12g2986 561 Gene3D - 393 540 IPR011989 -
Amo12g2986 561 Coils Coil 165 188 - -
Amo12g2986 561 Pfam Armadillo/beta-catenin-like repeat 432 468 IPR000225 GO:0005515
Amo12g2986 561 Gene3D - 153 392 IPR011989 -
Amo12g2986 561 SUPERFAMILY ARM repeat 156 538 IPR016024 -
Amo12g2986 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 363 IPR000225 GO:0005515
Amo12g2986 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2986 Amo-Chr12 117327923 117331866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2986 206 479 U-box Gene Family AT3G54790 29.391 5.93e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2986 - - gmx:100809488 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3396 14 136505548 136509130 Amo12g2986 12 117327923 117331866 PCT
Amo04g2985 04 105540864 105544883 Amo12g2986 12 117327923 117331866 PCT
Amo12g2986 12 117327923 117331866 Amo14g3396 14 136505548 136509130 PCT
Amo12g2986 12 117327923 117331866 Amo04g2985 04 105540864 105544883 PCT