Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2978 TTGAACGGGGTTTTGATCGTCTCGCGTTCCGTTGGAGGGAGGCTGGCGACATGGGCCTTGTTTGGGGCCAAAAAACCAAAAAAGGTTGGAACCCAGCCTTTGGGTCTTGGCTTCAACCATCTGATAACATTGAAGGAAGCCCTAAGTGCAGTGAGGAGGACCGACGTCGCTGTTGTTGTTGCTGCCGCTCGTGTCGGTGGCGCGCGGGATCCGCTCGTGGTCAAATTGGTCCGAGGCGGTGAAGTTGAGGAACAGCGAGTCGTCATCCTGAACGTTGCACAACGTTGGCCGATGGAGTTCAACCGTATCTTCGACAGTGAGGGTCAAGACTCGGATGGGGACAGTTCAGATGATTGTTCTGGACATTATCATGGTACTGACGAAGAATACGATGAAGAGGAGGGTTTTGAGGCCCAATGTGGTCCCAAAGCGAGGGAAAAAGGTGTTGGTGATGGGGTCAATTGTAGGGGGTCTGGCAGTGCAAGTGAGGAGGCAGGCGGCATGCCAAGCCGGCAAGTCTTCGCGGATGACTTCCTGGGCAGAGACTTTGCAACCGAGGAGGATGCTTACGCTGCGTACAAGGAGTTTGCCAGATTCAGGGGTTTTGGAGTTCGGAAGGGAGATGTAGCTCGGGTTAATGGGGTTTTGGTCAGAAGAGACTTTTTTTGCCATCGACAAGGGACAAGACATCCCAAGCACTACGACCGTCCTGAGCGAGTAAGGGAGGAGAGGCTCGAGAGCCGGACGGATTGTAAGGCAAAGTTAAAGATTTACTACGATGTGCAACACAGCGTTTGGAAGGTGAGAACCATCATGGACGAGCACAACCACGAGCTTGCCCCGGCGATCCATCAAGGACGCTTGCTTCGATATGGTGCCCTTACCGGGCTGATGAGTTTGGTTGCTAAACTTGGCTCTGAAGATGCCGAGGAGTTTGTGGTGGCTAGGGATGGCATTGCCAACCTCGCGGAGGAACTTCAACGAAGAGCGTACGATCGGGTCGGAAGCCAACTTGGGCTGTCGTCGCTGTCGGCACTCAATGACCCACTGGTTGCAAAAACAAAGGGGGCTCCGAGAAAGGGCAAGGAACCGGAACCGGAACCGGGCACACAATCTGAGGTTCCAACGAAGCGACGACGTTGTACAAGCTGTGGGGTTCCTGGTCATACAAAAAGGACATGCAGCTGGCGTCGCGAGCATCGCGGGGCCGGCACTGAGGGTGGAAAGGTCCCAGGTTGCGTGGAGTGCTCCTCTGATGTCCGTAGTTTCCCGTCCGCAACTGCGAAGGTGTGGGAGGCGATTAATTCCGACACCGGCGACAACGGCCGCACCGCTCCAACCCGTGCTGAGGGTGCAGAAATGACGTCCAATCATGGCTGTAGTCGTACGGCTTGCAACCCCCTAATGGGTGTTGGGGGTGGGGGGACAAACATCTTTCTCGGCGGGCAACACATTGAACAGTTCTTTGCTTCGCAAGGTTGCTCGGTCAAAAAAGGAGAGTCTCATGGAACCGCTGCCAGCCCAAGTATGTCTAATCCGACAAGGCACACAAACGACGAACTGTTCGAGCATTGGCTTTCACAGAATGCTGCGGGAAGGCCCTCGTCCAGCAGAAGGCATGGGTGGACATAG 1632 0.5509 LNGVLIVSRSVGGRLATWALFGAKKPKKVGTQPLGLGFNHLITLKEALSAVRRTDVAVVVAAARVGGARDPLVVKLVRGGEVEEQRVVILNVAQRWPMEFNRIFDSEGQDSDGDSSDDCSGHYHGTDEEYDEEEGFEAQCGPKAREKGVGDGVNCRGSGSASEEAGGMPSRQVFADDFLGRDFATEEDAYAAYKEFARFRGFGVRKGDVARVNGVLVRRDFFCHRQGTRHPKHYDRPERVREERLESRTDCKAKLKIYYDVQHSVWKVRTIMDEHNHELAPAIHQGRLLRYGALTGLMSLVAKLGSEDAEEFVVARDGIANLAEELQRRAYDRVGSQLGLSSLSALNDPLVAKTKGAPRKGKEPEPEPGTQSEVPTKRRRCTSCGVPGHTKRTCSWRREHRGAGTEGGKVPGCVECSSDVRSFPSATAKVWEAINSDTGDNGRTAPTRAEGAEMTSNHGCSRTACNPLMGVGGGGTNIFLGGQHIEQFFASQGCSVKKGESHGTAASPSMSNPTRHTNDELFEHWLSQNAAGRPSSSRRHGWT* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2978 543 Pfam FAR1 DNA-binding domain 193 280 IPR004330 -
Amo12g2978 543 MobiDBLite consensus disorder prediction 104 168 - -
Amo12g2978 543 MobiDBLite consensus disorder prediction 105 129 - -
Amo12g2978 543 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 176 280 IPR031052 GO:0006355
Amo12g2978 543 ProSiteProfiles Zinc finger CCHC-type profile. 379 394 IPR001878 GO:0003676|GO:0008270
Amo12g2978 543 MobiDBLite consensus disorder prediction 349 384 - -
Amo12g2978 543 MobiDBLite consensus disorder prediction 502 516 - -
Amo12g2978 543 MobiDBLite consensus disorder prediction 497 518 - -
Amo12g2978 543 PANTHER PROTEIN FAR1-RELATED SEQUENCE 11 176 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2978 Amo-Chr12 117185269 117190177 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo12g2978 FAR1 3.6e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2978 - - aip:107640136 259.996