Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2975 ATGGCATCTTCTTCTTTCAATGTTCCTTTAATCAAACATGATCTCTTCATAAGCTTTAGAGGAGAAATTCGCACTTCTTTTCTTTGCCATTTGATAAAAAGATTGCGCGATGACAGAATCATTAGTTTCTTTGTTGACGAGGAAAATCTTGGTGCTGGAGATGAGATCTCATCCGCACTTCTTCAAGCAATTGAGGAATCTTCCATTTCATTGGTCATCTTCTCGAAAGATTATGCTTCTTCGAGATGGTGTATGGAGGAGCTTGTGAAGATTATTGAATGCAAAGAACAATATCAAAGGACTCTGGTACCTGTTTTTTACAATGTTGATCCTTCTCATGTAAGGCACCAGAAACGAACTTTTGAAGAGGCTTTTGATGTCCACACTGAGAAGTATAGAGAAAACATGGCAAAGGTGCAGAATTGGAGATCTGCATTAAGAAAGGCTGCTGATTTGTCTGGAATCCATTATCCATCAACCTTCATCAGAAATGAAGTTGAGCTCATTGAAAAAATTATTGAAGTTGTGAATGAGAAGTTGCCGCCTATTTGTCCAAATAAATCCAAAGGTGTTGTTGGAATTGATGAACAAGTTAAGTCTATTGAATCGTTATTGGCAAAAATGGAGCCGAATGAAGTTGGAATCCTTGGAATTTGGGGCATGGGCGGTATAGGTAAAACAACCATTGCTCAAGTTATATTCAATAAATATTCCTCACAGTATGAAGGTTGTTGCTTCTTGAAAAATGTCAGAGAAGAATCAGAAAGGCACGGTCTGGATTATTTGTATGAGCAACTCTTTTCTCAACTACTGAAGAAACAAAATCTCCTTGTGAAAGGTTCTGCCAATGCAATATCTGCCATTTACGAGAGAAGATTGAGTCAGAAAGAAGTTCTCATAGTACTTGACGATGTGGATACATCAGATATATTAGATTATCTAACTGGAGAACAAACCTGCTTGGCACCAGGTAGTAGGGTCATTGTAACAACCAGAGACAAGCAGATACTCATTGCTGCAAGAGCACATAGAATATACGAGGTCAAGCGATTGAGCTTTAAGAGCTCCCTTGAGCTTTTTTGCATAAAAGCCTTTAACAAAAGCTATCCTGAAAATGGATATAAAAAGCTTTCACAAATGGCAGTTAATTATGCAAATGGCATTCCACTAGCCTTAAAAGTATTGGGTTCTTTTTTATGCTCAAAAAGTGCAGTAGTTTGGAAAAATGCACTAAAAAAACTCCAGAGTTGCCCTGATAAGAGGATTTTCAATGTGTTGAAATTGAGCTACGATGGATTAGATGATTCGGACAAGAGCATATTCCTTGACATTGCATACTTTTTCAAAGGAGAATGCAAAGATAATGTCACAAGATTTCTAGACTCATGTAGTTTCTATGCGGATGTTGGAATAGACAATCTTGAAAGTAAAGCTCTTATAACTATTTCCTACAATAGAATACAAATGCATGACTTGATACAGCAAATGGGTTGGGAAGTCGTTCGCCAAGAATCAAATAAAGATCCTACAGAGCTCACTCGAATAAATAAGCCTGAAGATTTTCACAATTTATTGAAAAATAGCAAAGGAACAAATTTAGTTGAAGGTATTATGATAGACTTGTCTCAAATTGGAGATCTACACTTCAATGCTGACACCTTTAAAAATATGCCTCAACTAAGGTTTCTTAAGTTTTATGCTCCATGGGATGAAAAACAGTTGAATGTGTACATTCCCATACCCCTGGAGCCGTTTTCTGCTAGACTCAAGTATTTGGAGTGGAATAGTTATCCTCTGAATTCTCTATCATCAATGTTTTGTGTGGAGCAGCTTGTTGAGCTTAGGATGCCAAACAGTCAAATTTCTAAACTTTGGGATGGAACGCAGGAACTTCCGAATTTGATAGTGCTTTACCTTTATGGATGTAAAAAGTTGGTAGAGCTTCCAGATTTCAGTAAAGCAACAAAGCTTAAAACCATAGATCTTTGGAATTGTGAAAAACTATGTCAACTTCATCCATCTATTTTATCCATCCAAACTCTTGAGGAATTATATCTTACTGGTTGCACAAAATTGAAGTGTGTCAAAAGCAATTTGAAGTCTCTTAAAACATTTTATGCTTATAATTGTTTAAGCCTGGAGAAATTTTCAGTGTCATCAGAAAAACTGTCGGATTTGGATATCTCTTTGTGGAGAATTAAAAGTCTACCAAATGAAATATGTAGCTTTTTTTCTCTTGAGTATCTTTGTCTTAGTTGTGTTTGTTATCCTGGGTACAAAGTTCCAAAGTGGTTCGGATGTGAAACAAGAGGAGCATCCATAATAATTGAACTTCATCAACCTTACTACGAGTTGTTGGGTTTCTTCTTCTGTTGTGTTATTTCTCAAAACTTACCTTCTTATTATTTTGAAGAATTGGATCTTGTCAATATCAAGTGTGAATACCGCCACTTCGGAGATGGCGTAAAGGACACATTTGTAAGTAAAAATCTAAACTTTGTTTCTAAACGACGATGTAGCTGTGATCATGTTTTAATATGGACTGATCCATTTGGTAGTGAAAACATATTGGGTGAAATTGAGAGGTGCAGACTCAGAGGTGGCAGTGATGATGATGATAGCACTTGCAACCAAAAGATGTCATTCAGATTCAGTATTGATAGACCTAAGAGAGGGAAGAGAGTCCAAATAAGGAGAGAAAATGATGAAGATTGTTTTATCAAAGGGTGTGGGGTTATTCCAATGTATGCCTCAACTCTCTTGGATGCCATTCAAAATCTTGAATTGGAGTTCAACTTGAAGCCTCATCATAACCCCATCCCAGGGATAAATCTGGACGAAGTAAAAAGTATGATGATCCGGAAGAGCAAAGGAAAATCAAAACTCCACTGA 2892 0.3672 MASSSFNVPLIKHDLFISFRGEIRTSFLCHLIKRLRDDRIISFFVDEENLGAGDEISSALLQAIEESSISLVIFSKDYASSRWCMEELVKIIECKEQYQRTLVPVFYNVDPSHVRHQKRTFEEAFDVHTEKYRENMAKVQNWRSALRKAADLSGIHYPSTFIRNEVELIEKIIEVVNEKLPPICPNKSKGVVGIDEQVKSIESLLAKMEPNEVGILGIWGMGGIGKTTIAQVIFNKYSSQYEGCCFLKNVREESERHGLDYLYEQLFSQLLKKQNLLVKGSANAISAIYERRLSQKEVLIVLDDVDTSDILDYLTGEQTCLAPGSRVIVTTRDKQILIAARAHRIYEVKRLSFKSSLELFCIKAFNKSYPENGYKKLSQMAVNYANGIPLALKVLGSFLCSKSAVVWKNALKKLQSCPDKRIFNVLKLSYDGLDDSDKSIFLDIAYFFKGECKDNVTRFLDSCSFYADVGIDNLESKALITISYNRIQMHDLIQQMGWEVVRQESNKDPTELTRINKPEDFHNLLKNSKGTNLVEGIMIDLSQIGDLHFNADTFKNMPQLRFLKFYAPWDEKQLNVYIPIPLEPFSARLKYLEWNSYPLNSLSSMFCVEQLVELRMPNSQISKLWDGTQELPNLIVLYLYGCKKLVELPDFSKATKLKTIDLWNCEKLCQLHPSILSIQTLEELYLTGCTKLKCVKSNLKSLKTFYAYNCLSLEKFSVSSEKLSDLDISLWRIKSLPNEICSFFSLEYLCLSCVCYPGYKVPKWFGCETRGASIIIELHQPYYELLGFFFCCVISQNLPSYYFEELDLVNIKCEYRHFGDGVKDTFVSKNLNFVSKRRCSCDHVLIWTDPFGSENILGEIERCRLRGGSDDDDSTCNQKMSFRFSIDRPKRGKRVQIRRENDEDCFIKGCGVIPMYASTLLDAIQNLELEFNLKPHHNPIPGINLDEVKSMMIRKSKGKSKLH* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2975 963 SUPERFAMILY L domain-like 533 763 - -
Amo12g2975 963 SMART till_3 12 152 IPR000157 GO:0007165
Amo12g2975 963 PRINTS Disease resistance protein signature 292 306 - -
Amo12g2975 963 PRINTS Disease resistance protein signature 652 668 - -
Amo12g2975 963 PRINTS Disease resistance protein signature 385 399 - -
Amo12g2975 963 PRINTS Disease resistance protein signature 215 230 - -
Amo12g2975 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 752 IPR044974 GO:0006952
Amo12g2975 963 SUPERFAMILY "Winged helix" DNA-binding domain 421 522 IPR036390 -
Amo12g2975 963 Pfam TIR domain 12 186 IPR000157 GO:0007165
Amo12g2975 963 Gene3D Ribonuclease Inhibitor 511 705 IPR032675 -
Amo12g2975 963 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 752 - -
Amo12g2975 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 444 IPR027417 -
Amo12g2975 963 Pfam C-JID domain 757 915 IPR045344 -
Amo12g2975 963 Gene3D - 351 434 IPR042197 -
Amo12g2975 963 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Amo12g2975 963 Gene3D - 180 345 IPR027417 -
Amo12g2975 963 Pfam NB-ARC domain 197 420 IPR002182 GO:0043531
Amo12g2975 963 Gene3D - 11 179 IPR035897 -
Amo12g2975 963 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Amo12g2975 963 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2975 Amo-Chr12 117096576 117101359 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2975 61 751 WRKY Transcription Factor Family AT4G12020 32.336 3.41e-89 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2975 - - ahf:112728444 1032.71