Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2960 ATGGCTTATTCTTCTTCTTTTTTATTGGATGCTCCCAGAATCAAACATGATGTCTTCATCAGCTTCAGAGGAGAAGACATCCGCACTTCTTTTCTTAGTCATTTGAGAAAAGAGTTGCATCGTTACCATATCGATTTCTTCGTGGACGACGAAAAACTGCACCCTGGAGATGACATTTCATCCACGCTTATTCAAGCCATTGAAGAGTCTTCTATTTCCTTGGTCATCTTTTCGGAAAACTATGCTTCTTCAACTTGGTGCWTGAATGAACTYGTGRAAGTAATTCAATGCATGAARCAAGATCAAAGGATTGTGATACCTGTTTTCTACAAMGTTGTTCCCTCTGATGTGCGGCATCAGAATAATTCCTTTAAGGAGGCTTTTGATAAACACCAACACAGATTGAAGGGAAATWTGATGAAGGTGCAAAGTTGGAGATTTGCTTTAAAGGAAGCTTCTAATTTATCTGGATTTCATTATCCATCAAAATATCAGGATGAATCTAAATTCATTGAAGAAATTGTGAATGATATTTCAGAGAAATTGTCATATATTTTCTCAATAGAATCCAAAGGTCTTGTTGGAATTGATGATAATTTTACAAGTATTGAATCACTATTGGAAATTGAATCCGTCAAGGTCCGAATCATAGGAATTTGGGGGATGGGAGGAATAGGTAAAACTACTATTGCTGAATTCTTATTTGACAAATATTCTTCCCAATATGAAGGCAGTTGTATGTTGAAAAATGTAAGAGAAGAATCACAAAAGTTTGGTGTGCCTCATTTATGTGAGAAACTTATTTCTGAGTTATTAGCTGGAGAAAGACTTGTTTTGAAAGGATCATCCAAAGCAAGATCCGCTTTTATCCAGAGAAAGTTGAGTCGAAAAAAAGTTTTCATAGTGCTTGATGATATGGATACATTAGAACAGTTTGAACATCTTGCTACAAAATGGTTGGGACCAGGGAGTAGGATCATTGTAACTACCAGAGACAAGCATGTCCTTAGAAAAGTTCATGGAATATATGAAGTCCAGGGCTTGAGCTTTAAAAATTCCCTTAAGCTATTTTGCTTGAATGCTTTTGACAAAGTCTATCCTGAAACTGGATATGAAGAGTTTTCTGAAATAGCAGTCAATTATGCAAATGGCATCCCATTGGCTTTACGAGTTTTGGGTTCTTTTTTATACTCTAAAACCATAGAAGAATGGGAAAGTGCTTTGGGAAAACTCAAGATTTATCCTAATATAGACATTTTTAATGTCTTAAAATTGAGTTATGATGGGCTAGATGATTTAGAGAAGGACATATTCCTTGACATTGCATTTTTTTTCAAAGGAGAAGATAAGGATGTTGTCATATCATTTCTAGAATCCTGTGGTTTTTTTCCTGCTATTGGCATAGGCAACCTTTCACGTAAAGCTCTCATAACTATTTCAAATCGTAACAGAATAGAAATGCATGATTTGATAGAGCAAATGGGTCGAGAAATAGTTCGTCAAGAATCAATTAAAGACCCAGGAAGACGTAGCCGCTTAAGTAACCATGAGGATGTCTACAATGTACTGAACAATAATAAGGGAACAGACTCAGTTGAAGGCATTATGTTGGACTTGTCTCAAATTAAAAGAGATCTACATTTAGATGCCGACACTTTTAAAAGGATGCCTAATATAAGGTTTCTTAAATTTTATGATTCATGGAGGCAAAAAGAATCAGCAAATGTGCACGTTTCTTCAACTTTTGATTCATTTCCAAAGGAACTAAGATACTTGGAGTGGAGTGGCTGCCCTGTGAAGTCTCTTCCACCAAATTTTTGTGCTGAGAAGCTTGTTAAGCTTTCTATGCCAAATAGCCAAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTAAATTTAAAGAAGATTAACCTTAGGGGATGCAAGCAGCTAGTGGAGCTTCCAGATTTTACTCGTGCATCAAACCTTGAAGAAATATACCTCATTGAATGCGTAAGGTTGTTTGAACTTCATCCATCCATTTTATCCATCCACAAGCTCAAAACTTTAAGTGTTTGGGGTTGCAAAGCACTAAAGAGTCTTAAAAGCAATATCCATTTAAAATCTCTTAAAGAACTCGATGTTCGTTGCTGCTCAAGCTTGAAGGAATTTTCATTGTCATCAGAGGAATTAAGAAGTTTGGATTTCAGAGGGACAGGAATTGATAAGTTGTACTCATCAGTTAGCCATCTAACGAAACTTGTAGAGTTTGATCCGAGTAATGTGAGACTTGAAACTCTTCCAAACGAAGTGTGTCTCTTGGTATCCCTTGAGGTACTAAATCTTGAAGGCTGCAAACAGTTGATTGAACTCCCTCAAAGTATGAAAGTCTTATCGCGGTTACAAGAACTCAACTTAGAGGATTGCTTCAGCCTTCAATCCTTACCGGAACTTCCACCATCTCTTATACATTTATCTGCCACAAACTGCAGATCGCTGGAGAAATTGTTCAATATAAAGACAGTATTCAGCTTAAATCTAAAATCCATCTCTTTTGAAAACTGCGAGAGGCTTGATGAGCATTCATTCTTAGAATATGTGCATCTTACAATGATGGGAGTAGCAATTAGAGATATATTGGATGACATGCTGCAATACAAAATTGAACCTCATGCTGATGATGACGATATTACGTTCTTCCCTGAATCCAACAGTCAGGTTTTTTATCCCGGAAGCAAGGTTCCACCATGGTTCATATATCAGACAAGAGAGGCTTCAGTAACTATTGACCTTCCTGCAGATCAACCATTGAACCAGCTAGTTGGTTTCATTCTCTGTTGTGTTGTTTATCATATTCCTTCCCATATAGAGTCTCCCACCACTAGTCGTGCTTTTTCTTCAAAACGGCCTCCCATAATCCGTTGTCAATACAGTGGTTTTGGGTATAGCAAACAGTTTGCTAAAACGAGTCGATGGAACTCGGATCATGTCTGCATATGGTTTCATGCTGCTCATAATCGTCAATGGCATGGCAACAATGCCACATTTAAATTCAAAGCTGAAACTCTATCTGAATTCAAAGTTGAAACTCGATGTGAAGATTATACGCCATGGAGAAAACGTATCCCTTATGTATGGAGGGTCATAGAGGAATGGGAGGTCATAGGGTGCGGGGTTTACCCAATATATGCCTCAGACATCCTAGATGTCTTTCAAAAAGTGGATCCTCAGTTCCAGTTTTTTAAAGATAGAAGCAGTTGGGAACGGGAATCTGGGTGGACTGATCTTCAATCGGTTTACACTCTCGACGAAGTCAAGACAAGGATGATTCACAAGATGGAAGCAGACCAAAAAAGGTTCTCATCGGTTTCCAGGATTTGTCAAATTTCTAATAACAGGACCAGGATGTCAATGGTTTCCTCAAAACCAAAAGAAGTATCTCAAAGCTTGAATGAAGAAGAAAACCAAGTCGATCAGAGAAACAGTTCTCCATTACCTAGGCGTTTGGTAAGGAAGATGTTTAAGTGCTTGTTTGGGTGTTGTTAA 3528 0.3756 MAYSSSFLLDAPRIKHDVFISFRGEDIRTSFLSHLRKELHRYHIDFFVDDEKLHPGDDISSTLIQAIEESSISLVIFSENYASSTWCXNELVXVIQCMKQDQRIVIPVFYXVVPSDVRHQNNSFKEAFDKHQHRLKGNXMKVQSWRFALKEASNLSGFHYPSKYQDESKFIEEIVNDISEKLSYIFSIESKGLVGIDDNFTSIESLLEIESVKVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEGSCMLKNVREESQKFGVPHLCEKLISELLAGERLVLKGSSKARSAFIQRKLSRKKVFIVLDDMDTLEQFEHLATKWLGPGSRIIVTTRDKHVLRKVHGIYEVQGLSFKNSLKLFCLNAFDKVYPETGYEEFSEIAVNYANGIPLALRVLGSFLYSKTIEEWESALGKLKIYPNIDIFNVLKLSYDGLDDLEKDIFLDIAFFFKGEDKDVVISFLESCGFFPAIGIGNLSRKALITISNRNRIEMHDLIEQMGREIVRQESIKDPGRRSRLSNHEDVYNVLNNNKGTDSVEGIMLDLSQIKRDLHLDADTFKRMPNIRFLKFYDSWRQKESANVHVSSTFDSFPKELRYLEWSGCPVKSLPPNFCAEKLVKLSMPNSQVSKLWDGVQDLVNLKKINLRGCKQLVELPDFTRASNLEEIYLIECVRLFELHPSILSIHKLKTLSVWGCKALKSLKSNIHLKSLKELDVRCCSSLKEFSLSSEELRSLDFRGTGIDKLYSSVSHLTKLVEFDPSNVRLETLPNEVCLLVSLEVLNLEGCKQLIELPQSMKVLSRLQELNLEDCFSLQSLPELPPSLIHLSATNCRSLEKLFNIKTVFSLNLKSISFENCERLDEHSFLEYVHLTMMGVAIRDILDDMLQYKIEPHADDDDITFFPESNSQVFYPGSKVPPWFIYQTREASVTIDLPADQPLNQLVGFILCCVVYHIPSHIESPTTSRAFSSKRPPIIRCQYSGFGYSKQFAKTSRWNSDHVCIWFHAAHNRQWHGNNATFKFKAETLSEFKVETRCEDYTPWRKRIPYVWRVIEEWEVIGCGVYPIYASDILDVFQKVDPQFQFFKDRSSWERESGWTDLQSVYTLDEVKTRMIHKMEADQKRFSSVSRICQISNNRTRMSMVSSKPKEVSQSLNEEENQVDQRNSSPLPRRLVRKMFKCLFGCC* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2960 1175 Pfam TIR domain 15 188 IPR000157 GO:0007165
Amo12g2960 1175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 771 865 IPR044974 GO:0006952
Amo12g2960 1175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 751 IPR044974 GO:0006952
Amo12g2960 1175 SMART till_3 15 155 IPR000157 GO:0007165
Amo12g2960 1175 Pfam NB-ARC domain 203 412 IPR002182 GO:0043531
Amo12g2960 1175 Gene3D - 11 186 IPR035897 -
Amo12g2960 1175 Gene3D - 348 431 IPR042197 -
Amo12g2960 1175 Gene3D Ribonuclease Inhibitor 699 855 IPR032675 -
Amo12g2960 1175 Gene3D Ribonuclease Inhibitor 523 698 IPR032675 -
Amo12g2960 1175 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 751 - -
Amo12g2960 1175 SUPERFAMILY L domain-like 547 858 - -
Amo12g2960 1175 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 771 865 - -
Amo12g2960 1175 Gene3D - 187 344 IPR027417 -
Amo12g2960 1175 MobiDBLite consensus disorder prediction 1132 1157 - -
Amo12g2960 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 441 IPR027417 -
Amo12g2960 1175 ProSiteProfiles TIR domain profile. 14 182 IPR000157 GO:0007165
Amo12g2960 1175 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 158 IPR035897 -
Amo12g2960 1175 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Amo12g2960 1175 Pfam C-JID domain 903 1060 IPR045344 -
Amo12g2960 1175 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Amo12g2960 1175 PRINTS Disease resistance protein signature 216 231 - -
Amo12g2960 1175 PRINTS Disease resistance protein signature 699 715 - -
Amo12g2960 1175 PRINTS Disease resistance protein signature 293 307 - -
Amo12g2960 1175 PRINTS Disease resistance protein signature 382 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2960 Amo-Chr12 116922739 116926620 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2960 16 821 WRKY Transcription Factor Family AT4G12020 34.878 7.69e-115 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2960 - - ahf:112728432 2194.08