Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2957 ATGAAACGAGATAAAAGGATTGTGATACCTGTTTTCTACAACGTTGTTCCCTCTGATGTGCGGCATCAGAATAATTCCTTTAAGGAGGCTTTTGATAAACACCAACACAGATTGAAGGGAAATATGATGAAGGTGCAAAGTTGGAGATTTGCTTTAAAGGAAGCTTCTAATTTATCTGGATTTCATTATCCATCGAAATATCAGGATGAATCTAAATTCATTGAAGAAATTGTGAATGATATTTCAGAGAAATTGTCATATATTTTCTCAATAGAATCCAAAGGTCTGGTTGGAATTGATGATAGTTTTACATGTATTGAATCATTATTGGAAATTGAATCGAGCGAGGTCCGAATCATAGGAATTTGGGGGATGGGAGGAATAGGTAAAACTACTATTGCTGAATTCTTATTTGACAAATATTCTTCCCAATATGAAGGCAGTTGTATGTTGAAAAATGTAAGAGAAGAATCACAAAAGTTTGGTGTGCCTTATTTATGTGAGAAACTTATTTCTGAGTTATTAGCCGGAGAAAGCCTTGTTTTGAAAGGATCATCCAAAGCAAGATCCGCTTTTATCCAGAGAAAGTTGAGTCGAAAAAAAGTTTTCATAGTGCTTGATGATATGGATACATTTGAACAGTTTAAACATCTTGCTACACAATGGTTGGGACCAGGTAGTAGGATCATTGTAACTACCAGAGACAAGCATGTCCTTGGAAAAGTTCATGGAATATATGAGCTCCAGGGCTTGAGTTTTGAAAATTCCCTTAAGCTTTTTTGCTTGAATGCTTTTGACAAAGTCTATCCTGAAGCTGGATATGAAGAGGTTTCTAAAATGGCAGTCAATTATGCAAAAGGYGTTCCATTGGCTTTAAAAGTTGTAGGTTCTTTTTTATATTCTAAAACCATAGAAGAATGGGAAAGTGCTTTGGAAAAACTCAAGATCTATCCTAATATAGACATTTTTAATGTCTTAAAATTGAGTTTTGATGGGCTAGATGAGTTAGAGCGGGAGATATTCCTCGACATTGTATTTTTTTTCAAAGGAAAAAACAAGCATGTTGTTGTACCATTTCTAGAATCCTGTGGTTTTTTCCCTGCTACCGGCATAGGCAACCTTTCACGTAAAGCTCTTATAACTATTTTAAAGGATGGTACAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTTCGTCGAGAATCAATTAAAGACCCTGGAAGACGTAGCCGCTTAAGTGACCCTGAGGATGTTTACAATGTACTGAATAATAATAAGGGAACAGACTCAGTTGAAGGCATTATGCTGGACATGTCTCAAATGAAAAGAGATCTACAATTAGATGCTGACACTTTTAAAAGGATGCCTAATATAAGGTTTCTCAAATTTTATGATTCATGGTGGAGGCACAAAGAATCAGCAAATGTGTACGTTTCTTCAACTCTTGATTCATTTCCAAACGAACTAAGATACTTGGAGTGGAGTGGCTGCCCTGTGAAGTCTCTTCCTCCAAGTTTTTGTGCTGAGAAGCTTGTTAAGCTTTCTATGCCAGATAGCCAAGTTTCTAAACTTTGGGATGGAGTTCAGGATCTTGTGAATTTAAAGAGGATGGACCTTATGCGATGTGAGCAGCTGGTGGAGCTTCCAGATTTTACTCGGGCATCAAACCTTGAAGTGGTACGCCTAGATGATTGTGTAAGGCTGCGTCAACTTCATCCATCCATTTTATCCATCCACAAACCTGAAGTCCTCGTGGTTGATAATTGCAAAGAACTGAAGAGTCTTAAAGGCAAGGTCCATTTTAAATCTCTTAAAACACTACGTGTAAGTGGGTGCTCAAGCTTGAAGGAATTTTCAGTGTCAGCAGAGGAATTAACGAGGTTGGATTTCAATGGGTCAATAATTGATACGTTGCACGCATCAGTTGGCCGTCTCAGCAAACTTGTAGAGTTAGACCTGAGTAATGTGAGACTTGAAACTCTTCCAAACGAACTGTGTCTTTTAGTATCCCTGATGGAACTAAATCTTCAAGGATGCAAACAGTTGATTGAACTCCCTGACAATATGAAAGCCTTGTCGCGGTTACAGAATCTCAATTTAACAGATTGCTGCAGCCTTCGATCTATACCGGAGCTTCCGTCATCTATTACACATTTATCTGCCACCAACTGCACATCGCTGGAGAAATTATTCAACGCAGAGACAGTATTCAGTTTAAATCTAAAGTCCATTTCATTGGAAAACTGCGAGAGGCTTGTTGATCATTCATTCTTAGAATATGTGCATCATACAATTATGGGAGTAGCAATTAGGGAGCTGTACGATGGGATGCTGCACTTTAAATATCTTTATCGTCATTTGGACCCTGATTCCCGTCCTGAATCCCCCCGCCAGGTTTTCTATCCCGGAAGAAAGGTTCCATCATGGATCAAATATCAGACAAGAGAGAGTGCGGTAACCGTTGACGTTGTTGCAGATCATCCTCATTATCTGGATACGCTAGTGGGTTTCATTTTGTGCTGTGTTGTTGATCATATTCCGTCTCAAAGAGGATTTCCTCCTATTGGTCCTGTTGGTTTTGCAAAATGGCCTCGCGTGATCCGTTGTCATTCAGATTTTGGGTACAGCAGTCAGTTTGCTAAGACGAGTAGATGGAGTTCAGACCATGTTTGTATATGGTTTACAGATCTTGGTCAATGGTTTACAGAACTTCGTAATTACAATAATTTGGATGGCAAGAATGTTACATTTGAATTCAAAGCTGAATCGCCGGAGTTTGAGCCGTTGCTATGTGGATGGGAGATCTTAGGGTGCGGGGTTTGTCCGGTATATTTCTCGAACATCCTGGATGTCTTGCAAAATACGGATCCGGATTTCCAGTTCTTTTATGATATACCGCCTTGGATAGATTGGGAGAGTGTTGATGAATTAGTTTTCACTCTTGACCAAGTGAAAACATTTATTAATCAAGTACTCCATCTCCCATCTTTTCAAGAGCTGAACCCACCCACTTTCTCTGGTAATCTTTTGAAAGATGACCCTCAATTTTTCATAGACAGCTTAAACAAAGTCTTTCAAGTCCTCAAATGTCCATATGACGCAGCGGTAGATCTGGCTACATATAATTTAAGAGGACATGCTTCTGACTGGTATAAAACACTTCTTCAAAGTAGAAGGGAACGCCGAATGCCATCGCTATTGTGGAATGAGTTTGTTGAGATCTTTTTGAAAAGATTTCTTCCTACTAGTATAAAGGAGAAGAATGCTGCTGATTTTGAGAAGTTAAAACAAACTCCTGATATGTCTGTAATGCAGTATGAGAATCGTTTCACTGAACTTTCTAGATATGCTGAGCACTTAGTGACTCCGGATATCATGAGAGTCAAGAGATTTGTTCAAGGACTAGCAAATCCATACTTCACTGCTCTTTCACCCATGGTGGAGAGTTTGACTTATTCAGAAATTGTGAATGCTGCTTATGGTATTGAAACTGAATTAGAGGAAAGGAGAGCTAACAAAGGCATTGGCAAAAAGAAAAGGATACAAGGAACATTTTCTGGAGAATCAAGCTATAGGGGTATATCAAGTCATCAGAATCACCCACAAACACAATCAATTGGGGTTATCCATTCTGAAGCTGCTTCAAAGGGTACCTCAGCCTCAGGGATTCGAGCTAGGAGTGCATTTGAACCAAGTATGTAG 3714 0.3891 MKRDKRIVIPVFYNVVPSDVRHQNNSFKEAFDKHQHRLKGNMMKVQSWRFALKEASNLSGFHYPSKYQDESKFIEEIVNDISEKLSYIFSIESKGLVGIDDSFTCIESLLEIESSEVRIIGIWGMGGIGKTTIAEFLFDKYSSQYEGSCMLKNVREESQKFGVPYLCEKLISELLAGESLVLKGSSKARSAFIQRKLSRKKVFIVLDDMDTFEQFKHLATQWLGPGSRIIVTTRDKHVLGKVHGIYELQGLSFENSLKLFCLNAFDKVYPEAGYEEVSKMAVNYAKGVPLALKVVGSFLYSKTIEEWESALEKLKIYPNIDIFNVLKLSFDGLDELEREIFLDIVFFFKGKNKHVVVPFLESCGFFPATGIGNLSRKALITILKDGTIEMHDLIEQMGREIVRRESIKDPGRRSRLSDPEDVYNVLNNNKGTDSVEGIMLDMSQMKRDLQLDADTFKRMPNIRFLKFYDSWWRHKESANVYVSSTLDSFPNELRYLEWSGCPVKSLPPSFCAEKLVKLSMPDSQVSKLWDGVQDLVNLKRMDLMRCEQLVELPDFTRASNLEVVRLDDCVRLRQLHPSILSIHKPEVLVVDNCKELKSLKGKVHFKSLKTLRVSGCSSLKEFSVSAEELTRLDFNGSIIDTLHASVGRLSKLVELDLSNVRLETLPNELCLLVSLMELNLQGCKQLIELPDNMKALSRLQNLNLTDCCSLRSIPELPSSITHLSATNCTSLEKLFNAETVFSLNLKSISLENCERLVDHSFLEYVHHTIMGVAIRELYDGMLHFKYLYRHLDPDSRPESPRQVFYPGRKVPSWIKYQTRESAVTVDVVADHPHYLDTLVGFILCCVVDHIPSQRGFPPIGPVGFAKWPRVIRCHSDFGYSSQFAKTSRWSSDHVCIWFTDLGQWFTELRNYNNLDGKNVTFEFKAESPEFEPLLCGWEILGCGVCPVYFSNILDVLQNTDPDFQFFYDIPPWIDWESVDELVFTLDQVKTFINQVLHLPSFQELNPPTFSGNLLKDDPQFFIDSLNKVFQVLKCPYDAAVDLATYNLRGHASDWYKTLLQSRRERRMPSLLWNEFVEIFLKRFLPTSIKEKNAADFEKLKQTPDMSVMQYENRFTELSRYAEHLVTPDIMRVKRFVQGLANPYFTALSPMVESLTYSEIVNAAYGIETELEERRANKGIGKKKRIQGTFSGESSYRGISSHQNHPQTQSIGVIHSEAASKGTSASGIRARSAFEPSM* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2957 1237 Pfam NB-ARC domain 106 315 IPR002182 GO:0043531
Amo12g2957 1237 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 660 IPR044974 GO:0006952
Amo12g2957 1237 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 61 IPR035897 -
Amo12g2957 1237 Pfam Leucine Rich Repeat 514 533 IPR011713 -
Amo12g2957 1237 Gene3D Ribonuclease Inhibitor 603 761 IPR032675 -
Amo12g2957 1237 Gene3D Ribonuclease Inhibitor 438 602 IPR032675 -
Amo12g2957 1237 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 5 660 - -
Amo12g2957 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 344 IPR027417 -
Amo12g2957 1237 PRINTS Disease resistance protein signature 119 134 - -
Amo12g2957 1237 PRINTS Disease resistance protein signature 196 210 - -
Amo12g2957 1237 PRINTS Disease resistance protein signature 285 299 - -
Amo12g2957 1237 PRINTS Disease resistance protein signature 603 619 - -
Amo12g2957 1237 Pfam Retrotransposon gag protein 1042 1140 IPR005162 -
Amo12g2957 1237 Gene3D - 92 245 IPR027417 -
Amo12g2957 1237 Gene3D - 1 89 IPR035897 -
Amo12g2957 1237 MobiDBLite consensus disorder prediction 1216 1237 - -
Amo12g2957 1237 ProSiteProfiles TIR domain profile. 1 85 IPR000157 GO:0007165
Amo12g2957 1237 ProSiteProfiles Leucine-rich repeat profile. 651 672 IPR001611 GO:0005515
Amo12g2957 1237 Pfam TIR domain 3 91 IPR000157 GO:0007165
Amo12g2957 1237 Pfam C-JID domain 805 950 IPR045344 -
Amo12g2957 1237 SUPERFAMILY L domain-like 390 760 - -
Amo12g2957 1237 Gene3D - 250 334 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2957 Amo-Chr12 116888375 116893183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2957 4 725 WRKY Transcription Factor Family AT4G12020 35.238 6.44e-106 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2957 - - ahf:112729160 2463.34