Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2955 ATGGATTATGGTAATAAGTACACTATTCCAATACCTGGAATCAAAGTTTTGGTGGTGGATTGTGATTCAACATCTCTAACATTGGCATCTAAAATGCTTCGTATCCTTGGATATGAAGTTGTGACTGCTAAACTAGGTTCTGATGCTTTACCAATTATTGAGAAGAATGAGCTTCACCTTGTGCTCATGGAGATTCATTTGCCTGACATGAAAATGTTTGAACTCATTGACAAAATCAGAGAAAGCTATGACATCCCATCTTTCATTATGAGTGCTGATGAAAATCAAACTTCAAAGTCAAAAGCACTAAGCAAAGGAGCTAAACTCTATTTCATAAAGCCACTTCTACTTTCTGATTTAAAGGGCCTCTGGAAATTTGCATCATGCAACACAAAAGTTTCAACAGTAACCACTGATCAAAATGGATCAAAGAGTATCATAGTGAACAAGGATCAAGAATGCAAACCACTGAATAATAATAACAATAATAATAACAAAGAGAAAAAACAAGAACTTGTTGAATCATCAGTGGTCCAGAGAAGGAAAAGAATTAGGTGGACTGATCATTTGCATATGAAGTTCATGGAAGCTGTTATCTTAGCAGGATCTGGTGCTGGTCCTAAGAAAATACATGAGTATATGAATGTGTCAGGAGTCACAAAAGAGCATGTTTCAAGCTATTTACAGAAATATCGCCAATCTTTGAAAGCGCAAGATAGTGAAATTCAATATCAAAGGAAAATGCTATCATCTGAGTTGAATTTAAGATCATACCAATTGAAGGATCTCTTCCATTGCAAGTCAGAGCAATTTCTTGATGCTCCTGCACATCTTCCTTCCACAAAAATTCCAACTGTTCATGAACCAGCTTTGAGCCAAAACCAATTACTCCCAGGGACACTGGTGCAAGGTGAGATGAATGGCAATGGTGTGGAATCTGTGGAGATTAGCCAAGAAGAAAGTTATACTAATGGAAGAGTTTCTGAAGAAGATCAATTAGACCCAAGTGAAGATTTTGAAACAATAATGACAAATACTGAGCCTTGTTTCACTAGCTGGAGTCAGCTACTTGATCCTGAAGAAACTTCTTACGAGGTTTCCTCTAAGGATTATACTGCTGAAAACAGTGAATTGAATTGTTCGATGCCGATGGAGAATGATATGTGTCAACAGTTTCCTGCATTTCCTTCAGTACCATCAGGAAATGTTGATGAGATCTTCAATATTTCAAAGGAAACTGAGAATGCCTGTGATGAGGATTTAGATAGTTGGCTAAAAAGCTTATAG 1287 0.3683 MDYGNKYTIPIPGIKVLVVDCDSTSLTLASKMLRILGYEVVTAKLGSDALPIIEKNELHLVLMEIHLPDMKMFELIDKIRESYDIPSFIMSADENQTSKSKALSKGAKLYFIKPLLLSDLKGLWKFASCNTKVSTVTTDQNGSKSIIVNKDQECKPLNNNNNNNNKEKKQELVESSVVQRRKRIRWTDHLHMKFMEAVILAGSGAGPKKIHEYMNVSGVTKEHVSSYLQKYRQSLKAQDSEIQYQRKMLSSELNLRSYQLKDLFHCKSEQFLDAPAHLPSTKIPTVHEPALSQNQLLPGTLVQGEMNGNGVESVEISQEESYTNGRVSEEDQLDPSEDFETIMTNTEPCFTSWSQLLDPEETSYEVSSKDYTAENSELNCSMPMENDMCQQFPAFPSVPSGNVDEIFNISKETENACDEDLDSWLKSL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2955 428 SUPERFAMILY Homeodomain-like 179 236 IPR009057 -
Amo12g2955 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 13 391 - -
Amo12g2955 428 Gene3D - 11 132 - -
Amo12g2955 428 Gene3D - 177 237 - -
Amo12g2955 428 Pfam Response regulator receiver domain 16 120 IPR001789 GO:0000160
Amo12g2955 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 391 IPR045279 GO:0009736
Amo12g2955 428 SUPERFAMILY CheY-like 12 127 IPR011006 -
Amo12g2955 428 MobiDBLite consensus disorder prediction 155 174 - -
Amo12g2955 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 233 IPR006447 GO:0003677
Amo12g2955 428 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Amo12g2955 428 SMART REC_2 14 124 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2955 Amo-Chr12 116864232 116867848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2955 13 267 Response Regulator Gene Family AT2G25180 31.461 8.18e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo12g2955 Response_reg 4.8e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2955 - - ahf:112728429 792.341