Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2953 ATGGGGAGTTCAGGTACCAACTTGGTAACTACAATAATTGGTTTTGGATTGAGTGCAACATTCATAGTGTTTGTGTGCACAAGAATCATTTGTGGGAGAATTCAAAGGTATATAGCATCATCATCATCTTCATCATCAAGGACTATATACGAATTTCAATCAAGACCAGACATAGAACGGGGAGAACATGTTATTGTTGAGGGAGTACCTGCTTTTGTTTCTGCAATCCCCACTTTAAAGTTCAACCAAGAGGCTTTCAGCTCCGTTGAATGTACACAGTGTGTGATATGTTTGGCAGATTACAAAGAACAAGAATTGTTGAGGATGATACCAAAATGTGGGCACTGTTTTCATGTCTCTTGCATTGATATGTGGCTAAGAAAGCAATCTACATGCCCTGTATGCCGTTTGCCACTTAGAAATGCTCTTGAACAAAAGAATGTGACAAGTTTGGCATTCACAATAAGCCACCACCACTCTCTTGATGAAGAGTATAATACTTCATTACAAAGGAACATTAGTAGTGATGATGAGAGGCCAGTAGTTGATTCTAATTCTAGTAACACCTCACTTCCAATTTCTGTAGGAGAACCTGATATAAGACCCTGA 609 0.3892 MGSSGTNLVTTIIGFGLSATFIVFVCTRIICGRIQRYIASSSSSSSRTIYEFQSRPDIERGEHVIVEGVPAFVSAIPTLKFNQEAFSSVECTQCVICLADYKEQELLRMIPKCGHCFHVSCIDMWLRKQSTCPVCRLPLRNALEQKNVTSLAFTISHHHSLDEEYNTSLQRNISSDDERPVVDSNSSNTSLPISVGEPDIRP* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2953 202 PANTHER OS11G0150450 PROTEIN 1 173 - -
Amo12g2953 202 MobiDBLite consensus disorder prediction 172 194 - -
Amo12g2953 202 CDD RING-H2_EL5_like 93 136 - -
Amo12g2953 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 145 IPR013083 -
Amo12g2953 202 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Amo12g2953 202 Pfam Ring finger domain 93 136 IPR001841 -
Amo12g2953 202 MobiDBLite consensus disorder prediction 172 202 - -
Amo12g2953 202 SUPERFAMILY RING/U-box 93 147 - -
Amo12g2953 202 PANTHER OS02G0676500 PROTEIN 1 173 - -
Amo12g2953 202 SMART ring_2 94 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2953 Amo-Chr12 116855695 116857649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2953 71 186 C3H Transcription Factor Family AT2G18650 33.621 8.77e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2953 - - adu:107475875 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2953 12 116855695 116857649 Amo12g2953 12 116855695 116857649 ECH