Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2951 ATGAGACCCGTGTTTTGCGGAAACCTGGACTTCGACGCGCGTCAATCTGATGTTGAGAGGCTCTTCAAAAGATACGGGAAGGTTGAAAGAGTGGACATGAAATCTGGGTTTGCTTTTATCTACATGGAAGATGAAAGGGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAATTTGGAAGAAAGGGGCGCCGTATACGTGTTGAGTGGACAAAGCAAGAACGGGACAGCAGAAGGTCAGGTGATTCAAGAAAATCCTCAAGTAATTCAAGACCATCGAAGACTTTGTTTATCATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGGAGGAATTTTGCTTTTATACAATATGAAACTCAGGAGGATGCTACAAGAGCTTTGGAAGCAACAAACTTGAGCAAATTTATGGATCGTGTTATCACAGTGGAGTATGCTATTAAAGATGATGACGACAGGAGGAATGGATACAGTCCTGATAGAAGAGGCAATGACTCCCCTGATGGGAGATATGGCCGGGGCAGATCCCCGAGTCCATATCGCAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCGAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCAAAGTATGAACGAGGTGAAAGCCCAGTCAATGGCAGATATGACAGCCGGTCTCCTCCTCCACGAGAAAGGTCTCCTCCTCCACGTGAAAGGTCGTCTCCCCCACGTGAAAGGTCGCGATCCTGA 792 0.4609 MRPVFCGNLDFDARQSDVERLFKRYGKVERVDMKSGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKSSSNSRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYETQEDATRALEATNLSKFMDRVITVEYAIKDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERGESPVNGRYDSRSPPPRERSPPPRERSSPPRERSRS* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2951 263 MobiDBLite consensus disorder prediction 72 93 - -
Amo12g2951 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Amo12g2951 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Amo12g2951 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Amo12g2951 263 MobiDBLite consensus disorder prediction 168 263 - -
Amo12g2951 263 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 211 - -
Amo12g2951 263 Gene3D - 78 246 IPR012677 -
Amo12g2951 263 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Amo12g2951 263 MobiDBLite consensus disorder prediction 168 187 - -
Amo12g2951 263 SMART rrm1_1 96 162 IPR000504 GO:0003723
Amo12g2951 263 SMART rrm1_1 3 70 IPR000504 GO:0003723
Amo12g2951 263 MobiDBLite consensus disorder prediction 72 86 - -
Amo12g2951 263 Gene3D - 1 77 IPR012677 -
Amo12g2951 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Amo12g2951 263 PANTHER - 4 211 - -
Amo12g2951 263 MobiDBLite consensus disorder prediction 220 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2951 Amo-Chr12 116835046 116838439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2951 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 4.33e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2951 K12893 - gmx:100797778 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2951 12 116835046 116838439 Amo12g2951 12 116835046 116838439 ECH