Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2950 ATGGTGGAAGATTATGGTGCTGCTGCTGCATCATTTGATGCTAGTTCAACAGAAGAATGGTTGCTTCATGCACAAAAGCTTGTTCCTGCAGCAATGTCTAAGGCAAAAGAGGTTAAAGTTTTCCCAGTCAAGTGGAAGATGATTATCTCGAAATTGGAGCAGATTCCGTCGCGTTTATCGGACTTGTCGAGCCACCCTTGCTTCTCCAAGAATGCTCTCTGCAAGGAGCAATTGCAGTCAGTTTCCAAGTCACTCGAAGAAGCTATCGAATTGGCCGAGCTTTGTTTGAAGGAGAAGTATGAAGGTAAGCTTCGGATGCAGAGTGATCTTGACGCTTTAGCTGGGAAACTCGATTTAAATCTGAAAGATTGCAGCTTGCTGATCAAAACCGGTGTGCTAGGAGAGGCTACTCTGCCTTTGATGGTGTCTGGTTCTGTTCAAGACTCTGATGTTGATTTTGCATCCATTAAGGAATTACTTGCAAGGCTTCAGATAGGTAACTTGGAAGCCAAGCAAAGAGCATTGGAGAAGCTCTATGATGTGATGAAAGAAGATGAGAAGAATGTTTTGGCTGTTCTTGGGAGAAGCAATGTTGCTGCATTGGTTCAATTGCTTACAGCAACATCTCCAAGGATTAGGGAAAAGGCTGCTACTGTGATATGTATTCTTGTGGAATCCGGTAGTTGCGAAAATTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTAATTCGGCTCGTTGAATCCGGTAGTGCTGCAGGGAAAGAGAAGGCCACGGTTTCTCTTCAGAGGCTGTCAATGTTGGCCGAAACCACCCGTGCAATTGTTGGACACGGTGCTGTTCGGCCGTTAATTGAGGTTTGCCAAACAGGGGACTCTGTTTCCCAGGCTGCAGCCGCTTGTGCTTTGAAGAATGCGTCGTCCGTGCCGGAGGTGAGGCAGGTTTTGGCTGAAGAAGGCATTGTGAAAGTGATGATTGAGCTCCTTAGCTCTGGAATTTTGTTGGGAACGAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACAGCGAGCAACGAGAATCTAAGAAGATCTGTCATAGCAGAAGGTGGTTTCAGCAGTCTCCTGGCCTATCTTGATGGCCCTCTTCCTCAAGAATCCGCGGTCGCAGCCCTGAGGAATTTGGTTGGTTCTGTTTCTGAGGATGTTCTGGATTCCCTCGGCTTGCTTCCTCGATTGGTTCACGCGCTTAAGTCGGGTTCCTTGGGAGCCAAGCAAGCCGCAGCCTCTGTCATTTGCCGGATTTGTGGCCCGGTTGAGATGAAAAAAATGATCGGCGAAGCCGGCTGCATACCTCTTCTGATCAATTTGCTTGAGGCTAAAGCAAATAGTGCTAGAGAAGCTGCATCACAAGCAATTTCGAGCTTGATGGTGCTGTCTGCGAATCGAAGAGAGGTTAAGAAGGATGATAAGATTGTGGTGCCAAGTTTGGTTCAGTTGCTTGATCCAAATCCACAGAACACTGCAAAGAAATATGCAGTTTCATGCCTTGCATCACTGTCTTCTTGCAAGAAATGTAAGAAGCTTATGATTTCTTATGGAGCAATAGGGTATCTCAAGAAGCTTAGTGAGATGGAGATTCCTGGATCTAAGAAGCTTCTAGAGAGATTGGAAAGAGGAAAACTCAGAAGCTTGTTTAGCAGAAAATAA 1686 0.462 MVEDYGAAAASFDASSTEEWLLHAQKLVPAAMSKAKEVKVFPVKWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQSVSKSLEEAIELAELCLKEKYEGKLRMQSDLDALAGKLDLNLKDCSLLIKTGVLGEATLPLMVSGSVQDSDVDFASIKELLARLQIGNLEAKQRALEKLYDVMKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKAATVICILVESGSCENWLVSEGVLPPLIRLVESGSAAGKEKATVSLQRLSMLAETTRAIVGHGAVRPLIEVCQTGDSVSQAAAACALKNASSVPEVRQVLAEEGIVKVMIELLSSGILLGTKEYAAECLQNLTASNENLRRSVIAEGGFSSLLAYLDGPLPQESAVAALRNLVGSVSEDVLDSLGLLPRLVHALKSGSLGAKQAAASVICRICGPVEMKKMIGEAGCIPLLINLLEAKANSAREAASQAISSLMVLSANRREVKKDDKIVVPSLVQLLDPNPQNTAKKYAVSCLASLSSCKKCKKLMISYGAIGYLKKLSEMEIPGSKKLLERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2950 561 Gene3D - 153 390 IPR011989 -
Amo12g2950 561 Coils Coil 165 188 - -
Amo12g2950 561 SUPERFAMILY ARM repeat 156 538 IPR016024 -
Amo12g2950 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 363 IPR000225 GO:0005515
Amo12g2950 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Amo12g2950 561 Gene3D - 392 540 IPR011989 -
Amo12g2950 561 Pfam Armadillo/beta-catenin-like repeat 432 468 IPR000225 GO:0005515
Amo12g2950 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
Amo12g2950 561 SMART arm_5 350 389 IPR000225 GO:0005515
Amo12g2950 561 SMART arm_5 471 514 IPR000225 GO:0005515
Amo12g2950 561 SMART arm_5 267 307 IPR000225 GO:0005515
Amo12g2950 561 SMART arm_5 308 349 IPR000225 GO:0005515
Amo12g2950 561 SMART arm_5 430 470 IPR000225 GO:0005515
Amo12g2950 561 SMART arm_5 185 225 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2950 Amo-Chr12 116828040 116830307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2950 206 479 U-box Gene Family AT3G54790 29.032 3.79e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2950 - - gmx:100809488 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2950 12 116828040 116830307 Amo12g2950 12 116828040 116830307 ECH