Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2923 ATGACCACCACTATTTCAATGTTCATGTCTAGATTAACACAACCCTTAATAAATGTTCCTACTAGCAATGTCCCAAAATTGAATGTGAGGCAAATTCAGAAAGAGAAAGTAGTTTTGATCATGGGAGCCACAGGAGCTGGAAAGTCAAAGCTTTCTGTTGACCTTGCAACATGTTTTCCTTCAGAAATCATCAACTCAGACAAAATCCAAGTGTATGAAGGACTTGACATAGTTACAAACAAAATCTCCAAAGAAGAGCAAAAAGGGGTGCCACATCACTTACTAGGGACACAAAATCCCAACATTGATTTCACATCCTATGATTTTTGTGACATGTCACTAGGTGCCATTGACTCAATCACTAGGAGGGAACAGCTTCCAATCATAGTTGGTGGATCCAATTCATACCTTGAAGCCCTAATTGATGATGATGATTACAAATTCAGATCAAGGTATGATTTTTGTTGCCTTTGGGTGGATGTGAAAATGGATGTTCTTGATTCATATGTGCAAAAAAGGGTTGACCAAATGTACCTAAATGGTATGGTCAATGAGCTTAGACCCTTTTTCAATCCCAATAATAAGGACTACTCAATTGGGATTAGAAAAGCAATTGGGGTGCCTGAATTTGATGAGTATTTTAGAAGAGAACATGTTGTTGATGAAGAAACAAAGCAAAGGTTGCTTGATGAAGCAATCAATGAAATCAAGGTCAACACTTGCAACTTGGCTAGGAAACAATTTGGAAAAATCCAAAGGCTAAGGAATGTTAAGAGATGGAAGATTCATAGGTTGGATGCAACACCTGTTTTCCAAAAACATGGACAAGAAGCAAATAAGGCATGGAACAAGTTTGTGTTGGAGCCTAGTGCTATGATTATTGCAAAGTTTTTATATAATAACAACTCATCATCATCATCATCATCATCATCATCATCCATCACTTCCAATAATAGAGTTGTTTCTGGATTTAGTAGTAGTGTTCCAGCTTCATCAGAGAGTGTTGTATGTGTGTGA 1017 0.3727 MTTTISMFMSRLTQPLINVPTSNVPKLNVRQIQKEKVVLIMGATGAGKSKLSVDLATCFPSEIINSDKIQVYEGLDIVTNKISKEEQKGVPHHLLGTQNPNIDFTSYDFCDMSLGAIDSITRREQLPIIVGGSNSYLEALIDDDDYKFRSRYDFCCLWVDVKMDVLDSYVQKRVDQMYLNGMVNELRPFFNPNNKDYSIGIRKAIGVPEFDEYFRREHVVDEETKQRLLDEAINEIKVNTCNLARKQFGKIQRLRNVKRWKIHRLDATPVFQKHGQEANKAWNKFVLEPSAMIIAKFLYNNNSSSSSSSSSSSITSNNRVVSGFSSSVPASSESVVCV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2923 338 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 28 304 IPR039657 -
Amo12g2923 338 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 262 - -
Amo12g2923 338 Gene3D - 34 298 IPR027417 -
Amo12g2923 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 145 IPR027417 -
Amo12g2923 338 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 28 304 - -
Amo12g2923 338 Pfam IPP transferase 148 248 - -
Amo12g2923 338 Pfam IPP transferase 70 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2923 Amo-Chr12 116336717 116337954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2923 150 314 C2H2 Transcription Factor Family AT2G27760 31.771 1.68e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2923 K10760 - gmx:100803964 450.669