Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2915 ATGACGATGATTCCATGGGGTGGAATCAGTTGCTGTTTGAGTGCAGCTGCTCTATACCTCCTTGGCAGAAGCAGTGGCAGGGATGCTGAGCTTCTTAAATCTGTAACAAGGGTCAATCAATTGAAGGAGCTGGCACAACTGTTAGATGCGGAAATCTTACCCTTGGTTGTTAGCATTTCTGGGAGAGTCAGCTCTGAAACCCCAATTCACTGTGAGTTCAGTGGTTTAAGAGGAGTAATAGTTGAAGAAACGGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCATGGATACAAGATTCTGCTTTAATGCTATCCATGAGTAAAGAAGTTCCTTGGTATCTGGATGATGGAAGTGACCGTGTGCATGTGGTAGGAGCCCGTGGTGCCACAGGATTTGTATTACCTGTTGCAAGTGAGGCGTTTGAAGAGTCCGGTAGGTCACTTGTACGTGGTACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGGGTCAAGAGAATCGAACGGGTACTTCCAGTTGGGACTTCATTGACTGTCGTTGGTGAGGCTGCTAAAGATGACATTGGGACTATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCTCCCAAAACACTTGATCAGCTTATCGCAAATCTGGGGAAATGGGCAAGATGGTATAAATATGCGTCTATGGGCTTGACACTATTTGGTGCTTACCTAATAGCTAAGCATGCTATTCGGTTTATCTTGGAAAGACGGCGTCGTTGTGAACTGCAAAAAAGGGTTCTCGCGGCCGCTGCTAAGAGACAAGGACAAGATAATGAAGGTGAAAAAGCTGACACCTCACCAGACGGCATGAAAAGGGACCGTTCAATGCCAGACTTGTGTGTAATATGCCTGGAGCACGAATATAATGCTGTTTTCGTACCATGTGGGCATATGTGCTGCTGTACTACCTGTTCTTCACACTTAACCAATTGTCCTCTTTGCCGGCGGCGGATCGAACAAGTAGTGAAGACTTTTCGTCATTGA 1026 0.4571 MTMIPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLDAEILPLVVSISGRVSSETPIHCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGSDRVHVVGARGATGFVLPVASEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTLDQLIANLGKWARWYKYASMGLTLFGAYLIAKHAIRFILERRRRCELQKRVLAAAAKRQGQDNEGEKADTSPDGMKRDRSMPDLCVICLEHEYNAVFVPCGHMCCCTTCSSHLTNCPLCRRRIEQVVKTFRH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2915 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 340 IPR013083 -
Amo12g2915 341 Pfam E3 Ubiquitin ligase 87 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Amo12g2915 341 PANTHER - 3 308 IPR044231 GO:0004842|GO:0016567
Amo12g2915 341 ProSiteProfiles Zinc finger RING-type profile. 294 329 IPR001841 -
Amo12g2915 341 CDD RING-HC_LRSAM1 293 332 - -
Amo12g2915 341 SUPERFAMILY RING/U-box 293 335 - -
Amo12g2915 341 Pfam Zinc finger, C3HC4 type (RING finger) 292 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2915 Amo-Chr12 116232595 116236598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2915 3 274 C3H Transcription Factor Family AT1G63900 77.737 1.84e-155 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2915 K15688 - gmx:100800734 628.246