Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2911 ATGGCATATTCTCCTTTCTCTAGTTCATCTGCTTTCAATGTTCCTCTAATCAAACATGATGTCTTCGTCAGTTTTCGAGGAATAGACATTCGCACTTCTTTTCTTAGTCATTTGACGAAAGACTTGCATCGTAATCAAATTGATTTCTTTGTTGACGATRAAAAGCTTCATCCGGGAGATGAGATTTCACCCACCCTCCTTCGAGCAATTGAGCAATCATACATTTCATTGGTCATCTTCTCCAAACACTATGCTTCTTCGAGATGGTGTATGGARGAGCTTGTGAAGATTATTGAATGCATGGAACAATATAAAAGGATTGTGATACCTGTTTTTTATAATGTTGATCCTTCTCATGTAAGGCATCAAAAAGGAATTTTGGCAGAAGCTTTTGATGTCCACAAAGAGAGATATGAAGAGGAAATTATGCAGAGTTGGAAATCTGTTTTGAAAAAGACGGCAAATTTATCTGGAATTCATTATCCATCGAAATATCGAAATGAATCAGAACTAATCGAAGATATTGTCAAGAATATTTCGGAGAAATTGTCGCATCTTTTGTCAAATGCATCCGAAAGCCTTATTGGAATTGATGAAAAATTAAACTCTCTTGAACGTCTAATGGAAATGGACCCTGAAGAAGTTCGAATTTTGGGAATTTGGGGCATGGGAGGCATAGGTAAAACAACAATTGCTAGAGCAATATTCGACAGATGTGCCTCTCGATATGAAGGTTGTTGCTTTCTACAAAATATAAGAGAAGAATTACAAAAGTCTGGTGAACACAGCTTATATGAGAAACTTATTTCTGAACTACTTGAAGGAGAACATCTCCTTGTAAAGGGATCAGCCCATGCAAGATCTATGTATGTTAAGAGAAGGTTGAGTCGGAAGAAGGTCTTCATAGTGCTTGACGATGTGGATACATTAGATATATTAGATTATCTAAYTATAAAACAAATCTGTTTGGCACCAGGAAGTAGGGTCATTATAACAACTAGAGACGAGCAACTAACTGCTGCAAGAGTGCATGCAATATACAAGGTCCAAGTATTGAGTTTTAAGAGTTCCCTTGAGCTCTTTTGCTTAAAAGCCTTTAACAAAAGCTATCCTGAAAATGGATACAAAGAGCTTTCAGAAATGGCAGTTAATTACACAAAGGGCAATCCATTAGCATTAAAAGTATTGGGATCCTTTCTATACTCAAGGAGCATAAAAGAATGGGAAAGTGCATTGAAAAAACTCAAGGTTCATCTCAATGTGGACATCTACAATGTCTTAAAATTGAGTTATGATGGTTTAGATGATTCAGATAAGAACATATTCCTTGACATTGCATTCTTTTTCAGAGGAGAATACAAGGATAATGTCATAAGGTTTCTAGACTGTTGTGGTTTCTTTGGCGACATTGGTATAAGCACTCTTCAGCGTAAAGCTCTTATAACTATTTTCGGCGATAAAATAGTAATGCATGACTTGATACAACAAATGGGTTGGGAAGTTGTTCGCCAAGAATCAAATAAAGATTCTGGAAAGCTCACTCGAATAAATAAACCTGAAGATTTCTGCAACTTATTGAAAAGTAGTGAGGAAAAAAGTTTAGTAGAAGGCATTATGATAGACTTGTCCCAAATTGGAGATCTACACTTAAATAAGAACACATTTAAAAATATGCCTCGTCTAAGATTTCTTAAGTTTTATGCTCCTTGGTATCGAAGACAGTGCAAAGTCTATGTTCCCACAACCCTGGACCCGTTTCCTGCAAAACTCAGCTATTTGGAGTGGAATAGTTGTCCTCTGAATTCTCTACCATCAAGGTTTTGTGTAGAGAAACTTGTTGAGCTTAGGATGACTAACAGTAAAATTTCTAAACTCTGGGATGGAGCACAGAATCTTGTGAGTTTGACAAACCTTGACCTTGGTGGATGTATAAAGTTGGTAGAGCTCCCAGACTTGAGTAAAGCAACAAAGCTTAAAAGGTTAAACCTAAAGGGTTGTGAAAATCTATGTCAACTTCATCCATCTATTTTATCCATCCAAACACTTGAGGGATTGTATCTTGATGGTTGCAAAAAATTGAAGAGTGTCAAAGGCAACATATATTTGAAGTCTCTTAAAACACTCAGGGTTCGAATGTGCTCAAGGCTGGAGGAATTTTCGGTGTCGTCAGAGAAACTGACGGCTTCGTGTTTCTCTTTGTTAAGAATTAAGAGTCTACCAAATGAATTCTGTTGCTCTATATATCTTCGAAGACAGATCTCATTTGAAAATTGCGTGAAATTGGAAGAGCAGTCGCTGAATGATATTGGTCAATATCAGATGATAAATTATTATGATTATCGTAGAATGGATGGTCGTATTTGTTATCCAGGGTACAAAGTTCCAGAGTGGTTTGTATGTCAGACAACAGAAGCGTCCATAACAATTGAACTTGATCAACCTTACTACCACTTGTTGGGTTTCATCTTCTGTTGTGTTGTTTCTCAAAACATACCGCCTCCTTATTTTAATAAATTGGGTACTCTCAATATTAGGTGTGAATACGGCCACGTCGGAGATGATGTAAAGCACACATTTCTAATTACAAGGCTAAACTTTGTTCCTGAAAGACGACGGAACTCTGAAGATCACGTTTTTATTTGGACTTATCAATTTCCTGAKGAAGACATGTTTAGGGAAATTGAAATGTGTGATGATGATGACAGCACTAGCAACCAAAAGATGTCATTCAGATTCAGTGTTGATAGACCTGAATATGAGAAGAGAGTAGAAGAAAGGAAAAAACAGGTTTTTATCAAAGGGTGTGGGGTTTTGCCAATTTATGCCTCAACTGTCGTGGATGTCATTCAAAAACTTGAATTGGAGTCCAAGTTGCAGTTGAACCCTCATCGTCATAACTCCATCACAAGGCAGAGTATAGACGCACTGAAAAGCAAGATGATCCGGAAGATTAAAGGAAAATCACATCGACTCCTGAAGAAAGTAGTCTGGATACATGAGTAA 3003 0.3696 MAYSPFSSSSAFNVPLIKHDVFVSFRGIDIRTSFLSHLTKDLHRNQIDFFVDDXKLHPGDEISPTLLRAIEQSYISLVIFSKHYASSRWCMEELVKIIECMEQYKRIVIPVFYNVDPSHVRHQKGILAEAFDVHKERYEEEIMQSWKSVLKKTANLSGIHYPSKYRNESELIEDIVKNISEKLSHLLSNASESLIGIDEKLNSLERLMEMDPEEVRILGIWGMGGIGKTTIARAIFDRCASRYEGCCFLQNIREELQKSGEHSLYEKLISELLEGEHLLVKGSAHARSMYVKRRLSRKKVFIVLDDVDTLDILDYLXIKQICLAPGSRVIITTRDEQLTAARVHAIYKVQVLSFKSSLELFCLKAFNKSYPENGYKELSEMAVNYTKGNPLALKVLGSFLYSRSIKEWESALKKLKVHLNVDIYNVLKLSYDGLDDSDKNIFLDIAFFFRGEYKDNVIRFLDCCGFFGDIGISTLQRKALITIFGDKIVMHDLIQQMGWEVVRQESNKDSGKLTRINKPEDFCNLLKSSEEKSLVEGIMIDLSQIGDLHLNKNTFKNMPRLRFLKFYAPWYRRQCKVYVPTTLDPFPAKLSYLEWNSCPLNSLPSRFCVEKLVELRMTNSKISKLWDGAQNLVSLTNLDLGGCIKLVELPDLSKATKLKRLNLKGCENLCQLHPSILSIQTLEGLYLDGCKKLKSVKGNIYLKSLKTLRVRMCSRLEEFSVSSEKLTASCFSLLRIKSLPNEFCCSIYLRRQISFENCVKLEEQSLNDIGQYQMINYYDYRRMDGRICYPGYKVPEWFVCQTTEASITIELDQPYYHLLGFIFCCVVSQNIPPPYFNKLGTLNIRCEYGHVGDDVKHTFLITRLNFVPERRRNSEDHVFIWTYQFPXEDMFREIEMCDDDDSTSNQKMSFRFSVDRPEYEKRVEERKKQVFIKGCGVLPIYASTVVDVIQKLELESKLQLNPHRHNSITRQSIDALKSKMIRKIKGKSHRLLKKVVWIHE* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2911 1000 Pfam NB-ARC domain 204 421 IPR002182 GO:0043531
Amo12g2911 1000 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 763 - -
Amo12g2911 1000 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 158 IPR035897 -
Amo12g2911 1000 Gene3D - 16 181 IPR035897 -
Amo12g2911 1000 Gene3D - 182 350 IPR027417 -
Amo12g2911 1000 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 763 IPR044974 GO:0006952
Amo12g2911 1000 Pfam C-JID domain 790 944 IPR045344 -
Amo12g2911 1000 Pfam TIR domain 18 191 IPR000157 GO:0007165
Amo12g2911 1000 Pfam Leucine Rich Repeat 611 630 IPR011713 -
Amo12g2911 1000 Gene3D - 351 435 IPR042197 -
Amo12g2911 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 445 IPR027417 -
Amo12g2911 1000 SUPERFAMILY "Winged helix" DNA-binding domain 422 526 IPR036390 -
Amo12g2911 1000 Gene3D Ribonuclease Inhibitor 509 735 IPR032675 -
Amo12g2911 1000 SMART till_3 18 156 IPR000157 GO:0007165
Amo12g2911 1000 PRINTS Disease resistance protein signature 294 308 - -
Amo12g2911 1000 PRINTS Disease resistance protein signature 386 400 - -
Amo12g2911 1000 PRINTS Disease resistance protein signature 630 646 - -
Amo12g2911 1000 PRINTS Disease resistance protein signature 217 232 - -
Amo12g2911 1000 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Amo12g2911 1000 SUPERFAMILY L domain-like 537 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2911 Amo-Chr12 116141158 116148179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2911 3 719 WRKY Transcription Factor Family AT4G12020 31.421 3.59e-86 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2911 - - aip:107627899 1023.46