Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo12g2891 | ATGCTTGTGTGTGCTTCTTCTTCTTCTTGTAGTCCTTCACATCAACCATGGTCCTCTTCCATTCCCACACTCCACTTGCTCCCAAAATGCACAACCTCACAACACGTGAAACAACTTCATGCACGAATCACAACAACGGGTCTCATAAAAAACACTTCTTTCACCACAAAGCTCGTTCTCACATTCATCTCTTCACCTCACGCGCCACTCGTGGAGTTTGCACGTTATATGTTCTTCAAGCACCACGCAACACAGGACCAACATGGCGATGACCCTTTTCTCTGGAACGCTGTTATAAGGTCTTATTCCCATGGTGGGTGTGACCCAAGGGGTGCTTTGGTTGTGCTCTGTTTCATGCATGACAATGGGGTCAATTTGGACAAGTACTCGTTTTCACTTGCTCTCAAGGCTTGTTCCCAAGTAGGTTTGTTGAAGGAAGCAATGCAARTTTATGGGTTGTTGTCAAAAACGTATCTTTGTTCTGATGTGTTCTTGCAAAATTGCTTGGTTGGATTGTTTGTGAAGTGTGGCTGTGTTGAGCTTGCGCGCCAAGTGTTTGATAGAATGTCTGAACGAGACGCTGTTTCTTATAACTCCATGATTGATGGGTATGTGAAGTGTGGGGYGGTTGAAAAGGCACGTGAGTTGTTTGATGGAATGCTATTAGATGAGAGGAACCTGATTACTTGGAATTCAATGATTGGAGGATATGTAAGGTGYGRGGATGGGTTGGATATTGCTTGGAGTATGTTTGATGAAATGCCTGAGAAAGACTTGGTTTCATGGAACACTATGATTGGTGGGTGCGTGAAGCATGCGAAAATGGAGGATGCTCAAGCATTGTTTGATGAGATGCCTGAGAGAGATTCWGTCAGTTGGGTTACTATGATYGATGGTTATGCGAAATCGGGTAATGTTGCTGCTGCAAGGAGCTTGTTTGATGAGATGCCAAGTAAAGGTGTTATTTCTTGTAACTCCATGATGGCTGGCTATGTTCAGAACGGTTATTGCATTGAGGCTTTGAAGCTGTTTCATGATATGAGAAGGGCAACAAACATGTTACCTGATGATACCACTTTGTTAATTGTTCTTACAGCAATTGCACAGTTAGGGCAAGTTGAATTTGGTATTGCAATACACCGGTATGTAATAGACAACGGGCACTCTCTAATTGGTAAACTCGGCGTTGCGCTAATTGACATGTACTCAAAGTGTGGCAGCATAGAGGAAGCTATCTCAGTATTTGAGAACATTGAAAGAAAATGCGTAGATCACTGGAATGCTTTGATTGGTGGGTTTGCGATACATGGAATGGGCGAAATGGCATTCGAGTTTTTCATGGAGATGGAAAGGCTTTCTATTACACCCGACAGTATCACATTCATCGGATTGTTGAGTGCTTGTGGACATGCTGGCATGTTGAAGGAAGGACTAATATGTTTTGAGCTTATGCAGAAAGTGTATAATCTTGAACCTAGAGTGCAACACTATGGATGTATAGTTGACATGTTTAGCCGTGCAGGGAAAGTTGAACAAGCGAAGCAATTCATTGAGATGATGCCAATTGAACCAAATGATGTAATTTGGAAGACTTTGATCAGTGCTTGTCAAAATCATCAGAATTTCTCAATAGGTGAGCCTGTAGCTAAGCAATTGGTTCAGCTAAGTTCATGTACTCCAAGTTATGTGCTTTTATCTAATATTTATGCAAGTTTGGGCATGTGGGAAAATGTTAAAAGGGTTAGGACAGAGATGAAAGAAAAGAATTTGATAAAGGTTCCTGGTTGTAGTTGGATTGAACTAGAGGGATGTGTTCACCAGTTTTCTGTACATGATAGGACACACCATCAGTCGCTGAGAGCACACACAGAGAGTAAAGAGTTCTCTTCCTTCCACCAGCCACCATGGGGCGTATGCACAGTCGCGGCTCTTCCTTACAAGAGGACTCCACCCAGCTGGCTCAAGATCTCATCTCAGGATGTTGAGGAGAATATCTGCAAGTTTGCCAAGAAAGGTCTTACTCCATCACAAATTGGTGTTATTCTTCGTGATTCTCACGGAATTGCTCAGGTGAAGAGTGTCACCGGAAGCAAGATTTTGCGTATATTGAAGGCCCATGGTCTTGCTCCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGCTGTCTCAATCAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCTAAATTCAGGTTGATTTTGGTAGAGAGCAGGATCCACCGACTTGCACGTTACTACAAGAAGACCAAGAAGCTTCCACCCGTATGGAAATATGAATCAACAACCGCCAGCACCCTTGTGGCTTAG | 2340 | 0.4303 | MLVCASSSSCSPSHQPWSSSIPTLHLLPKCTTSQHVKQLHARITTTGLIKNTSFTTKLVLTFISSPHAPLVEFARYMFFKHHATQDQHGDDPFLWNAVIRSYSHGGCDPRGALVVLCFMHDNGVNLDKYSFSLALKACSQVGLLKEAMQXYGLLSKTYLCSDVFLQNCLVGLFVKCGCVELARQVFDRMSERDAVSYNSMIDGYVKCGXVEKARELFDGMLLDERNLITWNSMIGGYVRCXDGLDIAWSMFDEMPEKDLVSWNTMIGGCVKHAKMEDAQALFDEMPERDSVSWVTMIDGYAKSGNVAAARSLFDEMPSKGVISCNSMMAGYVQNGYCIEALKLFHDMRRATNMLPDDTTLLIVLTAIAQLGQVEFGIAIHRYVIDNGHSLIGKLGVALIDMYSKCGSIEEAISVFENIERKCVDHWNALIGGFAIHGMGEMAFEFFMEMERLSITPDSITFIGLLSACGHAGMLKEGLICFELMQKVYNLEPRVQHYGCIVDMFSRAGKVEQAKQFIEMMPIEPNDVIWKTLISACQNHQNFSIGEPVAKQLVQLSSCTPSYVLLSNIYASLGMWENVKRVRTEMKEKNLIKVPGCSWIELEGCVHQFSVHDRTHHQSLRAHTESKEFSSFHQPPWGVCTVAALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA* | 780 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo12g2891 | 779 | ProSitePatterns | Ribosomal protein S15 signature. | 726 | 756 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
| Amo12g2891 | 779 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 422 | 456 | IPR002885 | - | |
| Amo12g2891 | 779 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 91 | 126 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | Ribosomal protein S15 | 702 | 771 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
| Amo12g2891 | 779 | SMART | Ribosomal_S13_N_2 | 620 | 688 | IPR012606 | GO:0003735|GO:0005840|GO:0006412 | |
| Amo12g2891 | 779 | Gene3D | Tetratricopeptide repeat domain | 91 | 223 | IPR011990 | GO:0005515 | |
| Amo12g2891 | 779 | Gene3D | Tetratricopeptide repeat domain | 396 | 645 | IPR011990 | GO:0005515 | |
| Amo12g2891 | 779 | CDD | Ribosomal_S15p_S13e | 698 | 771 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 260 | 289 | IPR002885 | - | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 322 | 356 | IPR002885 | - | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 195 | 221 | IPR002885 | - | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 426 | 457 | IPR002885 | - | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 228 | 260 | IPR002885 | - | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 291 | 321 | IPR002885 | - | |
| Amo12g2891 | 779 | TIGRFAM | PPR: pentatricopeptide repeat domain | 167 | 193 | IPR002885 | - | |
| Amo12g2891 | 779 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 193 | 227 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat family | 320 | 367 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat family | 422 | 468 | IPR002885 | - | |
| Amo12g2891 | 779 | Gene3D | - | 663 | 710 | - | - | |
| Amo12g2891 | 779 | Pfam | Ribosomal S13/S15 N-terminal domain | 643 | 688 | IPR012606 | GO:0003735|GO:0005840|GO:0006412 | |
| Amo12g2891 | 779 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 178 | 240 | - | - | |
| Amo12g2891 | 779 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 6 | 175 | - | - | |
| Amo12g2891 | 779 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 243 | 613 | - | - | |
| Amo12g2891 | 779 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 258 | 288 | IPR002885 | - | |
| Amo12g2891 | 779 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 289 | 323 | IPR002885 | - | |
| Amo12g2891 | 779 | Hamap | 30S ribosomal protein S15 [rpsO]. | 620 | 777 | IPR023029 | - | |
| Amo12g2891 | 779 | Gene3D | Tetratricopeptide repeat domain | 288 | 394 | IPR011990 | GO:0005515 | |
| Amo12g2891 | 779 | SUPERFAMILY | S15/NS1 RNA-binding domain | 694 | 770 | IPR009068 | - | |
| Amo12g2891 | 779 | Gene3D | - | 711 | 779 | - | - | |
| Amo12g2891 | 779 | Pfam | E motif | 539 | 600 | IPR046848 | - | |
| Amo12g2891 | 779 | SMART | Ribosomal_S15_2 | 698 | 777 | IPR000589 | GO:0003735|GO:0005840|GO:0006412 | |
| Amo12g2891 | 779 | Gene3D | Tetratricopeptide repeat domain | 224 | 287 | IPR011990 | GO:0005515 | |
| Amo12g2891 | 779 | Pfam | PPR repeat | 228 | 258 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat | 195 | 221 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat | 167 | 192 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat | 260 | 288 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat | 497 | 520 | IPR002885 | - | |
| Amo12g2891 | 779 | Pfam | PPR repeat | 397 | 421 | IPR002885 | - | |
| Amo12g2891 | 779 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 178 | 240 | - | - | |
| Amo12g2891 | 779 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 6 | 175 | - | - | |
| Amo12g2891 | 779 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 243 | 613 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo12g2891 | Amo-Chr12 | 115596984 | 115603034 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo12g2891 | 640 | 779 | Cytoplasmic Ribosomal Protein Gene Family | AT3G60770 | 91.429 | 4.83e-87 | 270 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo12g2891 | - | - | gmx:100788616 | 957.977 |