Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2890 ATGGTTATACCCACTTCCTTTTTTATATCAGTTCTTCTTCTCTTTGCCATAAATCCCATAACTGAAGCTGGAACTCACAGAAAAGTAGTAGTATCCAAATTGTCACACTTAGATGAAGAAGCAAATGCTTTGATTTTGAGTGGTTGGTGGAGTAACCAACACAATATTTCAAACCGTTGCAGCTGGCCTGGTATTCACTGCAACAATGCTGGAAGCATCACAGAGATTACTTCTCCTCCAAGGAAGAATTATGACAGCTCTCTCGCGAAACAGGGCCGGTCGACAGGCATCGATTTTTCTGTCTTTTTGAATCTTGTCCACCTTGATCTCAGTGAAATGGGGTTGTATGGATTCCCAAAGGGGCTAAGTAGTCTCAACAAGCTGAAGTTTCTGAACCTATCTCATAACAAGCTTAAAGATGAACCAGGTTCTCCTTCTTCATTGGCAAATCTAACTCAACTTCTTGTGCTTGATATTTCTTACAATTTCATTGGTGGTCAAATTCCTAATGAATTCAGCATGCTAGAGAGGCTTGTCACATTGGATTTGAGTTCAAACTTGTTCAGTGGAACCATTCCTTTAATCTTCAGTCATATGTCCAATCTCATCTACATGAATCTTTCTAGCAATCAACTAACTGGTGACCTTACTGCTACAACATATGCAAATCTCACCAAGTTAGAGAATCTTGACCTTTCCCAAAACGGATTTAGTGGTCTCATCCCTCAAGAAATAGGGAATTTAACAAATTTGTTAACCTTAGACCTTAGTTTAAACAACTTGGTTGGTCCAATACCTCACCAAATAGGGTACTTAAACCGTTTGACAAGTCTCCACCTTAGTTCAAATTCCATTAATGGTTCTATACCTTCAAGTTTAGGACTTTTAACCCAGTTGGAAGTGTTGACTATCAAAAACAATGAAGTAGGTGGATCTATCCCCAGTGAATTAGAGAACTTGGTTCATCTTAAAGTTTTAGATCTTTCATATAATGAAATCTTGGGTGTTATACCAAAATGGATATCTAACCTGACACAATTAGATGATATAAGACTTTCAGGGAATCAAATTTGTGGTTATATCCCATCTACTATACTTGTTCATATCAGTCATGTGGATCTCAGCACAAACAAGTTAATTGGAAGCATTCCCTTTCAGATTGGTAATCTTTCATATCTAGATGTTAGCTACAACAACCTTGCTGGTCCAATTCCTGAGCAAATAGGGTACTCGAACCGGTTGACGTTTCTCCACCTTGATTCAAATTGTTTCACTGGTTCTATACCTTCAAGTATAGGACTTCTAACAGAAATGATAATGCTCACTATGGGACACAACAAGATAAATGGTAGTATCCCCATAGAAATAGAWMATTTGTTGCATTTAGRAGCTTTGGATCTSSWTACKAATAGACTTTCTGGTGTTATCCCAKCTGGTCTCTTTGKTCACCTTACATTTGTAGATCTCAGCAYTAACAATTTGAGTGGAAGCATTCCTTCTCTAATTGGCAAAAGTGTTAATCATTTAGACCTTAGTTACAACAATCTCAGTGGCAACATACCTGAGGGGATAGATTCTGTGCAATTCTACAATTTAGAGTGCAATCCTTTTCTCAATGGAGATTACCACAATTGCCAATCAGAAAACCTTAATAATGGTCATGATAAAAGTTTAAGTACTTTGGGTTTGGTTTTGATAATTGTGGCCAGTATTCTTGTTTCTTTTGGCTCCATAGGGATTGGAATTTGTGTTCTATTTGCCAGGCATCGCMGTCGCAGACTAAAAAGCAAGGCAGCAAAGCATGGAGACTTGTTCTCAATTTGGGAATATGATGGCAAAATTGCATTTGAGGACATTGTTGAAGCTACAGAGGACTTTGATATCAGATATTGCATTGGAACTGGTGCTTATGGTAGTGTCTACAAAGCAGAACTTCCGAGTGGCAAAACCATTGCATTGAAGAAGCTTCACAAAACAGAATCAGAAAATCCATCTTTTTACAARAGCTTTTGCAAGGAGGTTGAGGTCTTGACACAGATTCGCCACCGWAACATCATTAGGCTTTATGGCTATTGCTTGCATAACARATGCATGTTTTTGGTGTATGAATACTTGGAAAGAGGAAGCTTGTTCTGTAACTTGGCCAATGAGATAGAAGCTCAAGAGTTGAATTGGAGCAAGAGGGTGAACATCATTAAAGGGACATCATATGCTCTTGCTTATATGCATCATCATTGTACTCCTCCTATTGTTCATCGTGACATTACCACCAGTAATATACTGCTGAATTCAGAGTTGGATGCTTGTGTATCAGATTTCGGCACAGCGAGACTTCTTGATACTGATTCATCTAACCTAACTATTCTAGTTGGTACTTATGGATATGTTGCTCCAGAATTGGCTTACACCATAAATGTGACTACAAAATGTGATGTATATAGTTTTGGAGTGGTAGCTTTAGAAACAATGATGGGGCATCATCCAGGAGAATTCATTTCCCGTCTGTCAAAGCCATCTACTCAGAACTTAATGGTGAAAGATGTATTGGATTCAAGGATTCCTCTCCCAATTCTTGAGAAAGATTTGCAAGATGTTGTGCTTGTTATGACACTAGCATTGGCATGCCTCTCTTCTGATCCAAAATCTAGACCATCAATGGAGGATGTGGCTAATGATTTTTTGGCTTCTAATTCACCAATACATTTCTCTTTCTCTGATGTTTCAATCTACCAATTGATGAATCAAGAAATATATGTCATAGGTAAAAATTAG 2772 0.3784 MVIPTSFFISVLLLFAINPITEAGTHRKVVVSKLSHLDEEANALILSGWWSNQHNISNRCSWPGIHCNNAGSITEITSPPRKNYDSSLAKQGRSTGIDFSVFLNLVHLDLSEMGLYGFPKGLSSLNKLKFLNLSHNKLKDEPGSPSSLANLTQLLVLDISYNFIGGQIPNEFSMLERLVTLDLSSNLFSGTIPLIFSHMSNLIYMNLSSNQLTGDLTATTYANLTKLENLDLSQNGFSGLIPQEIGNLTNLLTLDLSLNNLVGPIPHQIGYLNRLTSLHLSSNSINGSIPSSLGLLTQLEVLTIKNNEVGGSIPSELENLVHLKVLDLSYNEILGVIPKWISNLTQLDDIRLSGNQICGYIPSTILVHISHVDLSTNKLIGSIPFQIGNLSYLDVSYNNLAGPIPEQIGYSNRLTFLHLDSNCFTGSIPSSIGLLTEMIMLTMGHNKINGSIPIEIXXLLHLXALDLXTNRLSGVIPXGLFXHLTFVDLSXNNLSGSIPSLIGKSVNHLDLSYNNLSGNIPEGIDSVQFYNLECNPFLNGDYHNCQSENLNNGHDKSLSTLGLVLIIVASILVSFGSIGIGICVLFARHRXRRLKSKAAKHGDLFSIWEYDGKIAFEDIVEATEDFDIRYCIGTGAYGSVYKAELPSGKTIALKKLHKTESENPSFYKSFCKEVEVLTQIRHRNIIRLYGYCLHNXCMFLVYEYLERGSLFCNLANEIEAQELNWSKRVNIIKGTSYALAYMHHHCTPPIVHRDITTSNILLNSELDACVSDFGTARLLDTDSSNLTILVGTYGYVAPELAYTINVTTKCDVYSFGVVALETMMGHHPGEFISRLSKPSTQNLMVKDVLDSRIPLPILEKDLQDVVLVMTLALACLSSDPKSRPSMEDVANDFLASNSPIHFSFSDVSIYQLMNQEIYVIGKN* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2890 923 SUPERFAMILY L domain-like 99 491 - -
Amo12g2890 923 Gene3D Phosphorylase Kinase; domain 1 587 704 - -
Amo12g2890 923 Pfam Protein kinase domain 631 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2890 923 SUPERFAMILY Protein kinase-like (PK-like) 612 892 IPR011009 -
Amo12g2890 923 Pfam Leucine rich repeat 177 236 IPR001611 GO:0005515
Amo12g2890 923 Pfam Leucine rich repeat 298 357 IPR001611 GO:0005515
Amo12g2890 923 ProSitePatterns Protein kinases ATP-binding region signature. 632 654 IPR017441 GO:0005524
Amo12g2890 923 Gene3D Ribonuclease Inhibitor 296 368 IPR032675 -
Amo12g2890 923 Gene3D Ribonuclease Inhibitor 219 295 IPR032675 -
Amo12g2890 923 ProSitePatterns Tyrosine protein kinases specific active-site signature. 750 762 IPR008266 GO:0004672|GO:0006468
Amo12g2890 923 ProSiteProfiles Protein kinase domain profile. 626 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2890 923 Gene3D Transferase(Phosphotransferase) domain 1 705 902 - -
Amo12g2890 923 SMART LRR_typ_2 224 247 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 272 296 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 344 368 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 151 174 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 125 150 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 387 411 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 175 198 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 199 223 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 459 483 IPR003591 -
Amo12g2890 923 SMART LRR_typ_2 320 343 IPR003591 -
Amo12g2890 923 ProSiteProfiles Leucine-rich repeat profile. 127 148 IPR001611 GO:0005515
Amo12g2890 923 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 42 267 - -
Amo12g2890 923 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 259 912 - -
Amo12g2890 923 Gene3D Ribonuclease Inhibitor 29 218 IPR032675 -
Amo12g2890 923 SMART LRR_sd22_2 125 153 - -
Amo12g2890 923 SMART LRR_sd22_2 224 250 - -
Amo12g2890 923 SMART LRR_sd22_2 320 346 - -
Amo12g2890 923 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 42 267 - -
Amo12g2890 923 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 259 912 - -
Amo12g2890 923 Gene3D Ribonuclease Inhibitor 369 565 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2890 Amo-Chr12 115590533 115593669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2890 39 798 Receptor kinase-like Gene Family AT4G08850 35.621 9.37e-137 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo12g2890 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2890 - - adu:107475518 1776.91