Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2887 ATGWCTATATCATCCACTTGCATTATTTTGATATTCGTATCATTTGTGTTTTTAGTTGGCATCGCCACTACTGCTGGAACTCACAAATTGTCAGCCTTAGATGAAGAAGCCAATGCTATGCTTTCAATTAGTAAAGAGTTGTGGAGTAACCAACATAATAATGTCTCAAACCGTTGCAACTGGCCCGGAGTCAACTGCAACAAAGCTGGAAGTATAACATTGCTTTCACCTCCAACTCCAAGTAATTTCACCTTCGAGTTCAGGACACAACTCTGCTTTTTGAAACTAAACTTTTCAGTGTTTCAAAATCTAGTCCATCTAGATCTCAGTGAAATGGGGTTATGTGAGTTCCCTAAACTAAGTGGTCTCAAGAAGCTACAACATCTCAACCTATCATACAACACTTTTGAAGGTGAGCTTCCTTTTACATTATTGGAAAATCTAACTCAACTTGTGGTGTTGGACATTTCTAACAATTATATTAATGGTACAATTCCACAAGAACTAAGCAAGCTGGAGAGACTTGTCATGTTGGACTTGAGTGCCAACAGCTTCGATGGAAGCATTCCATTGATCTTGGGTCAAATGAGCAGTCTCACACACATGAACCTTTCCAATAATCTCCTGTATGGGGATCTTCCTTTCACACTGGCAAATCTAACTCAACTTCTTGTGTTGGACCTTTCCCAAAACAAACTTAGTGGCTTCATTCCTCATGAAATAAGGAAATTAACAAATTTATCAACCTTAGACCTGAGTTCAAATTTCTTGTCTGGTCCAATTCCTGAGCAAATCGGGTACTTGACCCGTTTGGAAGTGCTCACCATCGGATCCAACAGGATAGATGGTTGTATCCCCAAAGAAATAGAGCATTTGTTGCATCTAAAAGTTTTAGATCTGTCTCGTAATGCAATTTCTGGTGTTATCCCATCTTCTATCTTTATTCACTCTAGTTATGTGGACCTCAGCAATAACAATTTAAGTGGAACCATTCTTTCCCAAATTGGAAACCTTTCGTATTTAGACCTAAGTTTCAATAACCTTAGTATCAAAAACAGAAAGGAACTTGAGTCTGTTATTCCATTCTGTTATCTGTATTGCAATCCCTTTCTTGACAATGAATATTATGACTGCGATGATCATTTAGACAACCATCATAATAAGCATTTTGGCCGATCACTGGTTTTGGTCATAATTGTGGTCTGCATTACCATTTCATTGGGTTCTATTGGGATTGGAATGTGCATTTTCCGTGCCAGGCATCATGGCAAGCTTGAAAATAAGGCCACAAAAAATGGAGACTTGTTCTCAATTTGGAACTATGATGGCAAAATCGCATTTGAGGATATCATTGAAGCAACAGAGGACTTTGATATCAGATATTGCATTGGAACCGGCGCTTATGGTAGCGTCTATAAAGCGCAACTTCCAAGTGGCAAAACTGTTGCATTGAAGAAGCTTCACAAAACAGAATCAGAAAATGCATCATTTTACAAGAGCTTCTGCAATGAAGTTGAGGTCTTGACAGAGATTCGCCACCGTAACATCATTAGGCTTTATGGCTATTGTTTGCATAACAGATGCATGTTTTTGGTGTACGAATACTTGGAAAGAGGAAGCTTGTACTGTAACTTGGCCGACGAGATGGAAGCACAAGAGTTGAAGTGGAGCAAGCGGGTGAACATCATCAAAGGGACAGCTTATGCTCTTGCTCACATGCATCATCACTGTCCTTCTCCTATTGTTCATAGAGATGTCAGCAGCAACAATGTTCTGCTGAATTCAGAGTTAGAAGCTTGTGTCTCAGATTTCGGCACAGCGAGACTTCTTGATCCTGATTCATCTAACCAAACTCTTCTAGTTGGCACTTATGGATATGTTGCTCCAGAATTGGCATACACCATGAGTGTGACTACAAAATGTGATGTTTATAGTTTCGGAGTGGTGGCATTAGAAACAATGATGGGTCATCACCCAGGAGAATTCATGTCCGCTATGTCAAAGCCATCTACTCAACAATTATTGGTGAAAGATGTGTTGGATCCGCGGATTCCACTTCCGAATTCTCGAAAAGATATGCAACATGTTGTGCATGTTATAAAGCTAGCATTGGCATGCCTCTCCCCTGACCCAAAATCCAGACCATCAATGCAGGATGTGGCTAATGAGCTTTCAGCTTCCACGGCTTCAATGAATTTTTCTTTTTACGATGTCTCAATCTACCAATTGATGCAATAG 2238 0.3986 MXISSTCIILIFVSFVFLVGIATTAGTHKLSALDEEANAMLSISKELWSNQHNNVSNRCNWPGVNCNKAGSITLLSPPTPSNFTFEFRTQLCFLKLNFSVFQNLVHLDLSEMGLCEFPKLSGLKKLQHLNLSYNTFEGELPFTLLENLTQLVVLDISNNYINGTIPQELSKLERLVMLDLSANSFDGSIPLILGQMSSLTHMNLSNNLLYGDLPFTLANLTQLLVLDLSQNKLSGFIPHEIRKLTNLSTLDLSSNFLSGPIPEQIGYLTRLEVLTIGSNRIDGCIPKEIEHLLHLKVLDLSRNAISGVIPSSIFIHSSYVDLSNNNLSGTILSQIGNLSYLDLSFNNLSIKNRKELESVIPFCYLYCNPFLDNEYYDCDDHLDNHHNKHFGRSLVLVIIVVCITISLGSIGIGMCIFRARHHGKLENKATKNGDLFSIWNYDGKIAFEDIIEATEDFDIRYCIGTGAYGSVYKAQLPSGKTVALKKLHKTESENASFYKSFCNEVEVLTEIRHRNIIRLYGYCLHNRCMFLVYEYLERGSLYCNLADEMEAQELKWSKRVNIIKGTAYALAHMHHHCPSPIVHRDVSSNNVLLNSELEACVSDFGTARLLDPDSSNQTLLVGTYGYVAPELAYTMSVTTKCDVYSFGVVALETMMGHHPGEFMSAMSKPSTQQLLVKDVLDPRIPLPNSRKDMQHVVHVIKLALACLSPDPKSRPSMQDVANELSASTASMNFSFYDVSIYQLMQ* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2887 745 Gene3D Ribonuclease Inhibitor 190 265 IPR032675 -
Amo12g2887 745 Pfam Leucine rich repeat 198 255 IPR001611 GO:0005515
Amo12g2887 745 Gene3D Phosphorylase Kinase; domain 1 419 535 - -
Amo12g2887 745 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 235 743 - -
Amo12g2887 745 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 40 263 - -
Amo12g2887 745 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Amo12g2887 745 SMART LRR_sd22_2 148 171 - -
Amo12g2887 745 SMART LRR_sd22_2 220 249 - -
Amo12g2887 745 SMART LRR_sd22_2 268 294 - -
Amo12g2887 745 ProSitePatterns Protein kinases ATP-binding region signature. 463 485 IPR017441 GO:0005524
Amo12g2887 745 SMART LRR_typ_2 196 219 IPR003591 -
Amo12g2887 745 SMART LRR_typ_2 244 268 IPR003591 -
Amo12g2887 745 SMART LRR_typ_2 148 172 IPR003591 -
Amo12g2887 745 SMART LRR_typ_2 220 243 IPR003591 -
Amo12g2887 745 SMART LRR_typ_2 123 147 IPR003591 -
Amo12g2887 745 SMART LRR_typ_2 292 316 IPR003591 -
Amo12g2887 745 Gene3D Transferase(Phosphotransferase) domain 1 536 738 - -
Amo12g2887 745 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 235 743 - -
Amo12g2887 745 PRINTS Leucine-rich repeat signature 244 257 - -
Amo12g2887 745 PRINTS Leucine-rich repeat signature 223 236 - -
Amo12g2887 745 Gene3D Ribonuclease Inhibitor 266 362 IPR032675 -
Amo12g2887 745 ProSiteProfiles Protein kinase domain profile. 457 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2887 745 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 40 263 - -
Amo12g2887 745 SUPERFAMILY Protein kinase-like (PK-like) 438 724 IPR011009 -
Amo12g2887 745 ProSitePatterns Tyrosine protein kinases specific active-site signature. 581 593 IPR008266 GO:0004672|GO:0006468
Amo12g2887 745 Pfam Protein kinase domain 462 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo12g2887 745 SUPERFAMILY L domain-like 56 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2887 Amo-Chr12 115567931 115570529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2887 125 629 Receptor kinase-like Gene Family AT4G08850 39.194 3.01e-107 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo12g2887 Pkinase 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2887 - - ahf:112728721 1185.63