LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo12g2877	ATGGTGAGAGGGAAGACTCAGATGAGACGCATAGAAAATGCCACAAGCAGGCAAGTGACGTTTTCAAAGCGCCGCAATGGGTTGCTTAAGAAAGCGTTTGAGCTTTCTGTTCTTTGTGATGCTCAGGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGAGATAATTGAAAGATATCGCAAGCATACAAAGGATACTCCACCAGCAGCCAAATCAGCTGAACAGAATGTCCAGAATTTGAAGCAAGAAGCAGCAACCTTGATGAAAAAGATTGACATTCTTGAAGCCGCAAAAAGGAAATTCTTGGGAGAAGGTTTAGGATCATGCAGCATTGAAGAACTGATACAAATAGAACAACAATTGGAGAAGAGTGTAAGCATTGTTAGAGCAAGAAAGACTCAGCTTTACAAGGAACAAATTGAGCAACTAAAAGAAAAGGAAAAAGCCCTAATGGATGAAAATGCCATGCTCTATGACAAGTGTGATAATATGGTTCAAAATCTAGCAACAAATAAAACAAATAATAAGGATCAGAGAGAGAATCAAGCTCAACCCTATGCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACCGAATTGTTCATTGGACTTCCTGAAACAAGAACAAGGCGCATGTCTCCTACAAATTAA	681	0.4009	MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVALIIFSPRGKLYEFASSSMQEIIERYRKHTKDTPPAAKSAEQNVQNLKQEAATLMKKIDILEAAKRKFLGEGLGSCSIEELIQIEQQLEKSVSIVRARKTQLYKEQIEQLKEKEKALMDENAMLYDKCDNMVQNLATNKTNNKDQRENQAQPYAESSSPSSDVETELFIGLPETRTRRMSPTN*	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo12g2877	226	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Amo12g2877	226	MobiDBLite	consensus disorder prediction	181	207	-	-
	Amo12g2877	226	Gene3D	-	14	96	IPR036879	GO:0003677\|GO:0046983
	Amo12g2877	226	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Amo12g2877	226	Coils	Coil	80	107	-	-
	Amo12g2877	226	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Amo12g2877	226	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Amo12g2877	226	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Amo12g2877	226	SUPERFAMILY	SRF-like	3	74	IPR036879	GO:0003677\|GO:0046983
	Amo12g2877	226	Pfam	K-box region	83	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Amo12g2877	226	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Amo12g2877	226	MobiDBLite	consensus disorder prediction	181	226	-	-
	Amo12g2877	226	CDD	MADS_MEF2_like	3	75	IPR033896	GO:0000977\|GO:0045944
	Amo12g2877	226	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Amo12g2877	226	PANTHER	MADS-BOX PROTEIN SOC1	1	216	-	-
	Amo12g2877	226	PANTHER	MADS BOX PROTEIN	1	216	-	-
	Amo12g2877	226	Coils	Coil	139	170	-	-
	Amo12g2877	226	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo12g2877	Amo-Chr12	115394189	115403764	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo12g2877	1	158	MADS-box Gene Family	AT2G45660	75.949	2.08e-84	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Amo12g2877		K-box	1.1e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo12g2877	-		-	mtr:MTR_8g033220	290.812

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo12g2877	12	115394189	115403764	Amo12g2877	12	115394189	115403764	ECH