Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2842 ATGCACCCAGCTTATGACTTTCAAGGCCTTGTTGGAATTAATAAACCAGTCGACGAACTTGAGTCAATAGTTTTTGCCAATGGCTCAAAAGATATTCGTGTTATAGGAATTTGGGGCATGGGTGGCATTGGTAAGACTACTATTGCCACTGTATTATTTAACAAATTGTGTTCTCAATATGAAAGTCGTCATTTCCTAGCAAATGTCAGAAAGGAGTCAGAGAAGTGGGGAATAATTCAATTAAGAGACAAAATTCTTTCTGTATTCACAGACGAAAAAGATTTAAACATTGGTGTTCCCAACGGAGTACCGAAACATGTTTTGAGAAAACTTCGTCGCAGAAAGATTCTTGTTGTTCTTGACGATGTTAGTACTTCTGATCAAATCACAAACTTAGTTGGAGGACATAATTGGTTGGGTCCTGGTAGTAGAATCATTGTTACAACTAGGGATAAACATGCAATTTGTAAAGAAGCAGATGACATATACAAAGTAAAGGCATTGGAATCTAGTGATGCCCGACAGCTGCTAAGTTTGCATGCCTTTGATGGAACTGATGGGCATTGCCTTGAATTGCACTGGCATAATCTTGTGTCGAAAATGGTTGAATATGCTAAAGGCATCCCATTAGGATTGAAAGTTTTGGGTTCTTTTCTTTATGGCAAATGCTTTGAAGAATGGGAATGTCAATTCCAGAAGCTTCAGAAAATGCCCTTTCCAGAGATTCATAATGTGTTGAGATTAAGTTATGAAGGATTGGATCACCAAGAGAAGAGCATATTTTTATATGTTGCTTGTTTCTTCAAAGAGGATGAAGGAAAGGATACTGTAGAGAATTTATTAGATGCTTGTGGTTACTCAACATCTATTGCATTAAAAACTCTCCAAGATAGAGCTCTTATAAGTATTCAACATTGTGTATCCATGCATGACTTGATTCGAGAAATGGGCCGATGGATTGTGCGTCAACAAAGCATCAATAAGCCTGGAGAACAACGTCATTTATGGGATCCTCATGACATTCATCGTGTATTGAAACATAGAGAGGGCACGGACCATATTGAAAGCTTAACCTGGAACATGTCAAGTGTTAGTGCTGACATAAGCCTAAGTCCTCATTTGTTTGCTAGAATGGAAAATCTAAAACTTCTGAGGTTTTATTTCAATAATAATAATAATAATAGCAGTGATTATTACTATTATTATTATTATTGTTCGGATAATAACACATGCCAAGTGCATCTTCCAGAAGGTCTTGAAATACTGCCACAGAAACTACGACTCTTTCATTGGGACAATTACCCTGCGAAATCCTTTCCAACAACATTCAATGCAGAGTGTCTTGTTGAACTTCGTATGAAAGAAAGTCGCGTTGAAAAGCTCTGGGATGGTGTACAGGATATACCAAATATGAAAAGGATTGTTCTTAATGGATCCAAACAATTGATCGAGATTCCAGATTTATCTAAAGCCTTGAGTCTTCAAGAATTAGAACTCATGGGATGCATAAATTTGCTTTCGGTTCACCCATCAATTTTTTCTCTCCCAAAACTTGTTACGGTGACCCTATGGAATTGCCGAAGGCTTGAGAAACTTCCAGGGTGGTGTGAAGTGAAGAAGGAAGTATTGAGTGAAGCATCAGCATCATCAACATCATCGTGCTCAGGATCATCACATACTTCCCGCTCCAAGCTTCAATACTTAAACTTGGATGGATGTGTGAATCTGATGCATCTGCCAGACAGCTTTTCTAATCTCACCACTCTTAAAGTGCTTTATCTTGGAGGGTGCATAAAGTTAGACGCATCAAATCTATACATCTTATTTGATGCCTTATCTTCTTTAACACAGCTAGACTTGGATCAATGTGATAAGTTGTATGAAATCCCACATAACATCAGCAACTTATCATTGTTAGAGTCGTTATCACTCAGGGAAACTAACGTGAAGAGCATTCCAGAAACCATCAGACACCTTCCACGCCTCAGAAATCTCTACTTAACCAGTTGCACGGTGCTCCGGTCAATGCCTCGAATTCCACCATCCCTCCATTGTTTAACAGCCAATAACTGCAAATCGTTGGAGAGAGTGTTCACTCCAACACCTGAACTACTCCAACAACACCTCGCATTCTACGAAAAGGAGTATTATATTGGAGGCACGGTTTTTTCATTCAGGAATTGCCCAAATTTAAAGAAAGATTCAATTGATGCTATTCGTGAATATGTCAAGTGCTGCAATGAAGAGAAGAGATCAATGAGAGATGCTAGGAGTGTAGGGAATAAGAGAAAGCGTCATTGA 2301 0.3859 MHPAYDFQGLVGINKPVDELESIVFANGSKDIRVIGIWGMGGIGKTTIATVLFNKLCSQYESRHFLANVRKESEKWGIIQLRDKILSVFTDEKDLNIGVPNGVPKHVLRKLRRRKILVVLDDVSTSDQITNLVGGHNWLGPGSRIIVTTRDKHAICKEADDIYKVKALESSDARQLLSLHAFDGTDGHCLELHWHNLVSKMVEYAKGIPLGLKVLGSFLYGKCFEEWECQFQKLQKMPFPEIHNVLRLSYEGLDHQEKSIFLYVACFFKEDEGKDTVENLLDACGYSTSIALKTLQDRALISIQHCVSMHDLIREMGRWIVRQQSINKPGEQRHLWDPHDIHRVLKHREGTDHIESLTWNMSSVSADISLSPHLFARMENLKLLRFYFNNNNNNSSDYYYYYYYCSDNNTCQVHLPEGLEILPQKLRLFHWDNYPAKSFPTTFNAECLVELRMKESRVEKLWDGVQDIPNMKRIVLNGSKQLIEIPDLSKALSLQELELMGCINLLSVHPSIFSLPKLVTVTLWNCRRLEKLPGWCEVKKEVLSEASASSTSSCSGSSHTSRSKLQYLNLDGCVNLMHLPDSFSNLTTLKVLYLGGCIKLDASNLYILFDALSSLTQLDLDQCDKLYEIPHNISNLSLLESLSLRETNVKSIPETIRHLPRLRNLYLTSCTVLRSMPRIPPSLHCLTANNCKSLERVFTPTPELLQQHLAFYEKEYYIGGTVFSFRNCPNLKKDSIDAIREYVKCCNEEKRSMRDARSVGNKRKRH* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2842 766 Pfam Leucine Rich Repeat 447 466 IPR011713 -
Amo12g2842 766 PRINTS Disease resistance protein signature 34 49 - -
Amo12g2842 766 PRINTS Disease resistance protein signature 110 124 - -
Amo12g2842 766 PRINTS Disease resistance protein signature 205 219 - -
Amo12g2842 766 PRINTS Disease resistance protein signature 610 626 - -
Amo12g2842 766 Gene3D Ribonuclease Inhibitor 353 550 IPR032675 -
Amo12g2842 766 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 5 644 - -
Amo12g2842 766 SUPERFAMILY "Winged helix" DNA-binding domain 241 346 IPR036390 -
Amo12g2842 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 263 IPR027417 -
Amo12g2842 766 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 644 IPR044974 GO:0006952
Amo12g2842 766 Pfam NB-ARC domain 15 243 IPR002182 GO:0043531
Amo12g2842 766 SUPERFAMILY L domain-like 408 731 - -
Amo12g2842 766 Gene3D Ribonuclease Inhibitor 551 756 IPR032675 -
Amo12g2842 766 Gene3D - 167 254 IPR042197 -
Amo12g2842 766 Gene3D - 7 163 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2842 Amo-Chr12 114671565 114676060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2842 10 686 WRKY Transcription Factor Family AT4G12020 32.996 7.71e-88 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2842 - - adu:107475670 1437.17