Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2828 ATGTCGGTGACTCTGCACACAAATCTAGGAGACATCAAGTGCGAAATCTTCTGTGATGAGGTCCCAAAAACTTCTGAGAACTTTTTAGCATTATGTGGGAGTGGTTATTATGATGGGACTATATTTCACCGCAACATCAAAGGTTTCATGATTCAAGGGGGAGACCCAACCGGTACCGGGAAAGGGGGTACCAGCATATGGGGAAAGAAATTCAATGACGAGATTAGGGAATCTCTTAAGCACAATGCAAGAGGAATATTGTCAATGGCTAACAGTGGTCCAAACACTAATGGAAGCCAGTTCTTCATAACATATGCAAAGCAGCCACATTTAAATGGACTTTATACAGTATTTGGCAGAGTAATCCATGGATTTGAAGTTCTTGATCTCATGGAGAAGACTCAAACAGGAGCAGGGGACCGTCCACTTGCCGAGATTAGGCTCAATCGAGTCACGATACATGCTAATCCGCTTGCTGGTTAA 483 0.4327 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCGSGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2828 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 2 159 - -
Amo12g2828 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Amo12g2828 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Amo12g2828 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 159 IPR044666 -
Amo12g2828 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Amo12g2828 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Amo12g2828 160 Gene3D - 1 160 IPR029000 -
Amo12g2828 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2828 Amo-Chr12 114623284 114626999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2828 3 157 U-box Gene Family AT5G67530 53.548 3.39e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2828 K12734 - gmx:100306466 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2828 12 114623284 114626999 Amo12g2828 12 114623284 114626999 ECH