Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2821 ATGAGTATGAACACTAGTTGTAGCGGAAGCAGCCCTAGTGGTGGTGGTGGTGGTGGAAGCAGTAGTGGTGGTGGCAGCAGCGGTGGCGGTGGCCCTTGTGGGGCTTGCAAATTCTTAAGGAGAAAGTGTGTACCCGGGTGTATATTTGCACCCTACTTTGATTCGGAGCAAGGTGCCACACATTTTGCGGCGGTTCACAAGGTTTTTGGTGCTAGCAATGTTTCAAAGCTTCTCATGAATATTCCAGTTCATAAAAGACTTGATGCTGTTGTCACTATTTGTTATGAAGCTCAAGCAAGACTTAGAGACCCTGTCTATGGCTGCGTTGCTCATATCTTTGCTCTTCAACAACAGATCGTGAATTTACAAGCAGAACTTTCATATTTACAAGGTTATCTTGCAACCCTTGAGTTACCTCATCCGCCACAACCACCTCCTATTCCGCCGCAACCAACCCTAGCCCCTCCGACTCTCTCGATCTCTGACCTCCCACCTCCACATCCCACTCCTGCCAGCACGGCTACCGTGCCAATCACGTATGATTTGTCTTCGCTCTTTGAACCTATGGCCCAAACTTCTTGGGCCATGCACAATAGGCCCATTGATGCACCCCGCCAATTTTTGAGTAGTGACACATCATCTTTACAGTCTAGTGGCGACGGTGGCGGCGGTGGTGATCTTCAAACACTGGCTCATGAGCTTTTGCGTAGACATCGAGTTGATCCTACTGCTCCTGTGGCATGTTCTAGTGCCCCCTCATCATCACAATCTCATTCAAAATGA 783 0.4891 MSMNTSCSGSSPSGGGGGGSSSGGGSSGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGATHFAAVHKVFGASNVSKLLMNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQIVNLQAELSYLQGYLATLELPHPPQPPPIPPQPTLAPPTLSISDLPPPHPTPASTATVPITYDLSSLFEPMAQTSWAMHNRPIDAPRQFLSSDTSSLQSSGDGGGGGDLQTLAHELLRRHRVDPTAPVACSSAPSSSQSHSK* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2821 260 MobiDBLite consensus disorder prediction 1 24 - -
Amo12g2821 260 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 239 - -
Amo12g2821 260 MobiDBLite consensus disorder prediction 140 172 - -
Amo12g2821 260 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 3 239 - -
Amo12g2821 260 MobiDBLite consensus disorder prediction 205 223 - -
Amo12g2821 260 MobiDBLite consensus disorder prediction 205 260 - -
Amo12g2821 260 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
Amo12g2821 260 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
Amo12g2821 260 MobiDBLite consensus disorder prediction 140 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2821 Amo-Chr12 114421097 114426656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g2821 34 257 AS2 family AT2G45420 60.173 7.01e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo12g2821 LOB 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2821 K21994 - qsu:112017957 286.189